C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 1, group D, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090543 Nr1d2-001 ENSMUSG00000021775 10090 - 14:18204054-18239127 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090543
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090543 6.068±1.15 6.712±1.30 17.129±7.31 5.868±7.04 3.475±0.80 3.237±0.90 9.123±0.60 7.846±0.76 2.156±1.55 10.615±1.77 18.831±5.22 7.800±5.39 1.495±0.54 1.843±0.31

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001046 IDA core promoter sequence-specific DNA binding
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004887 IEA thyroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0019216 IMP regulation of lipid metabolic process
GO:0030522 IEA intracellular receptor signaling pathway
GO:0042752 IDA regulation of circadian rhythm
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process
GO:0050727 IMP regulation of inflammatory response
GO:0055088 IMP lipid homeostasis
GO:2000505 IMP regulation of energy homeostasis
GO:2001014 IMP regulation of skeletal muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128783 ppardb-201 protein_coding Danio_rerio 0.00000000007 75
ENSDART00000135394 ppardb-003 protein_coding Danio_rerio 0.00000000007 75
ENSDART00000132584 ppardb-001 protein_coding Danio_rerio 0.00000000007 75
ENST00000312521 NR1D2-001 protein_coding Homo_sapiens 0 2700
ENST00000383773 NR1D2-002 nonsense_mediated_decay Homo_sapiens 0 1371
ENST00000468700 NR1D2-004 retained_intron Homo_sapiens 0 446
ENST00000472780 NR1D2-005 retained_intron Homo_sapiens 0 462
ENST00000492552 NR1D2-003 processed_transcript Homo_sapiens 0 2172

Loading