C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 1, group D, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000383773 NR1D2-002 ENSG00000174738 9606 + 3:23945375-23978497 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyMuscleOvaryENST00000383773
Transcript ID Bladder Breast Kidney Muscle Ovary
ENST00000383773 1.685±0.00 1.996±0.00 3.946±0.00 1.230±0.00 2.141±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EM CIL_0002EM_0002 CGP 3:23891660-23946591
CIL_0002VH CIL_0002VH_0002 CGP 3:23916545-23980618
CIL_00025B CIL_00025B_0002 CGP 3:23945260-24495282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IDA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090543 Nr1d2-001 protein_coding Mus_musculus 0 1371
ENSMUST00000143308 Nr1d2-002 retained_intron Mus_musculus 0 1339

Loading