C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin, EGF LAG seven-pass G-type receptor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000271332 CELSR2-001 ENSG00000143126 9606 + 1:109250019-109275750 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000271332
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000271332 0.437±0.00 0.997±0.00 13.209±11.13 1.757±0.00 0.587±0.44 1.020±0.91 0.869±0.86 0.377±0.05 0.416±0.00 1.473±1.15 1.238±1.16 0.328±0.19 2.704±1.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IEA neuron migration
GO:0003341 IEA cilium movement
GO:0004888 IEA transmembrane signaling receptor activity
GO:0004930 NAS:IEA G-protein coupled receptor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005886 ISS plasma membrane
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0007156 ISS:IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007186 NAS:IEA G-protein coupled receptor signaling pathway
GO:0007218 IEA neuropeptide signaling pathway
GO:0016020 IEA membrane
GO:0016021 NAS:IEA integral component of membrane
GO:0016055 ISS Wnt signaling pathway
GO:0021591 IEA ventricular system development
GO:0021999 ISS neural plate anterior/posterior regionalization
GO:0022407 ISS regulation of cell-cell adhesion
GO:0032880 IEA regulation of protein localization
GO:0033326 IEA cerebrospinal fluid secretion
GO:0042384 IEA cilium assembly
GO:0048813 ISS dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090558 Celsr2-001 protein_coding Mus_musculus 0 10830
ENSMUST00000147251 Celsr2-002 protein_coding Mus_musculus 0 3197
ENSMUST00000016172 Celsr1-201 protein_coding Mus_musculus 0 1162
ENSMUST00000147565 Celsr2-003 protein_coding Mus_musculus 0 739
ENSDART00000082453 celsr2-201 protein_coding Danio_rerio 0 497
ENSDART00000136491 celsr2-001 protein_coding Danio_rerio 0 497
ENSMUST00000126935 Celsr2-006 processed_transcript Mus_musculus 0 409
ENSMUST00000133216 Celsr2-007 processed_transcript Mus_musculus 0 351
ENSMUST00000130941 Celsr2-005 processed_transcript Mus_musculus 0 204

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