C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proline/serine-rich coiled-coil 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090561 Psrc1-001 ENSMUSG00000068744 10090 + 3:108383839-108388179 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090561
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090561 0.421±0.18 0.235±0.11 0.707±0.18 6.304±5.21 0.639±0.26 1.086±0.49 0.145±0.04 0.298±0.17 5.963±3.15 0.500±0.20 0.032±0.01 2.493±1.05 1.776±0.94 0.069±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 ISS spindle pole
GO:0001578 IDA microtubule bundle formation
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005819 IDA spindle
GO:0005829 ISS cytosol
GO:0005876 ISS spindle microtubule
GO:0007080 ISS mitotic metaphase plate congression
GO:0008017 IDA microtubule binding
GO:0009987 IDA cellular process
GO:0015630 IDA microtubule cytoskeleton
GO:0030308 IMP negative regulation of cell growth
GO:0030496 IDA midbody
GO:0031116 IDA positive regulation of microtubule polymerization
GO:0045737 IMP positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0060236 ISS regulation of mitotic spindle organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369903 PSRC1-010 protein_coding Homo_sapiens 0 608
ENST00000369904 PSRC1-002 protein_coding Homo_sapiens 0 532
ENST00000369907 PSRC1-001 protein_coding Homo_sapiens 0 616
ENST00000369909 PSRC1-201 protein_coding Homo_sapiens 0 608
ENST00000409138 PSRC1-003 protein_coding Homo_sapiens 0 525
ENST00000409267 PSRC1-009 protein_coding Homo_sapiens 0 608
ENST00000418914 PSRC1-006 protein_coding Homo_sapiens 0 525
ENST00000429031 PSRC1-005 protein_coding Homo_sapiens 0 525
ENST00000459765 PSRC1-008 retained_intron Homo_sapiens 0 457
ENST00000471740 PSRC1-011 retained_intron Homo_sapiens 0 433
ENST00000474126 PSRC1-007 protein_coding Homo_sapiens 1e-27 126
ENST00000492431 PSRC1-004 retained_intron Homo_sapiens 0 523

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