C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAS-related protein-1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090678 Rap1a-201 ENSMUSG00000068798 10090 - 3:105727267-105801330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090678
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090678 8.790±0.10 4.043±2.89 24.047±9.01 11.520±2.88 6.187±1.21 4.077±2.68 7.301±1.12 6.588±1.73 15.126±8.91 13.401±4.44 11.970±4.34 7.420±8.21 21.971±10.44 3.020±0.90

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IDA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005737 ISS cytoplasm
GO:0005769 ISS early endosome
GO:0005770 ISS late endosome
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0007264 IDA small GTPase mediated signal transduction
GO:0008565 ISS protein transporter activity
GO:0010976 ISS positive regulation of neuron projection development
GO:0015031 ISS protein transport
GO:0017016 IPI Ras GTPase binding
GO:0017034 ISS Rap guanyl-nucleotide exchange factor activity
GO:0030054 IDA cell junction
GO:0032045 IDA guanyl-nucleotide exchange factor complex
GO:0032403 ISS protein complex binding
GO:0032486 ISS Rap protein signal transduction
GO:0032854 ISS positive regulation of Rap GTPase activity
GO:0038180 ISS nerve growth factor signaling pathway
GO:0043005 IDA neuron projection
GO:0045860 ISS positive regulation of protein kinase activity
GO:0048471 ISS perinuclear region of cytoplasm
GO:0061028 ISS establishment of endothelial barrier
GO:0070062 IEA extracellular vesicular exosome
GO:0070374 ISS positive regulation of ERK1 and ERK2 cascade
GO:0071320 ISS cellular response to cAMP
GO:1901888 ISS regulation of cell junction assembly
GO:1990090 ISS cellular response to nerve growth factor stimulus
GO:2000301 IGI negative regulation of synaptic vesicle exocytosis
GO:2001214 IMP positive regulation of vasculogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356415 RAP1A-002 protein_coding Homo_sapiens 0 1947
ENST00000369709 RAP1A-001 protein_coding Homo_sapiens 0 2538
ENST00000433097 RAP1A-003 protein_coding Homo_sapiens 0 593
ENST00000494982 RAP1A-004 processed_transcript Homo_sapiens 0 732
ENST00000554629 RAP1AP-001 processed_pseudogene Homo_sapiens 0 536
ENST00000579654 CTD-2350C19.5-001 unprocessed_pseudogene Homo_sapiens 0 392
ENST00000624620 RNF114-007 retained_intron Homo_sapiens 3e-16 90

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