C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAP1A, member of RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356415 RAP1A-002 ENSG00000116473 9606 + 1:111542218-111713113 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356415
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356415 23.098±0.00 33.059±0.00 1.778±0.00 8.641±5.34 13.207±5.82 11.671±0.00 7.581±4.69 6.135±0.41 14.971±0.91 25.765±15.67 7.159±6.65 8.953±3.89 8.516±1.68 13.686±11.97

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000186 TAS activation of MAPKK activity
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005769 ISS early endosome
GO:0005770 ISS late endosome
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0006112 TAS energy reserve metabolic process
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 TAS:IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007596 TAS blood coagulation
GO:0008565 IDA protein transporter activity
GO:0010976 ISS positive regulation of neuron projection development
GO:0015031 IDA:IEA protein transport
GO:0016020 IEA membrane
GO:0017034 ISS Rap guanyl-nucleotide exchange factor activity
GO:0030054 ISS cell junction
GO:0030168 TAS platelet activation
GO:0032403 IDA protein complex binding
GO:0032486 IMP Rap protein signal transduction
GO:0032854 ISS positive regulation of Rap GTPase activity
GO:0038180 ISS nerve growth factor signaling pathway
GO:0044281 TAS small molecule metabolic process
GO:0045860 ISS positive regulation of protein kinase activity
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048471 IDA perinuclear region of cytoplasm
GO:0050796 TAS regulation of insulin secretion
GO:0061028 IMP establishment of endothelial barrier
GO:0070062 IDA extracellular vesicular exosome
GO:0070374 ISS positive regulation of ERK1 and ERK2 cascade
GO:0071320 IDA cellular response to cAMP
GO:1901888 IMP regulation of cell junction assembly
GO:1990090 ISS cellular response to nerve growth factor stimulus
GO:2001214 ISS positive regulation of vasculogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090678 Rap1a-201 protein_coding Mus_musculus 0 1947
ENSMUST00000119337 Gm9392-001 processed_pseudogene Mus_musculus 0 830
ENSMUST00000118467 Rap1a-ps2-001 processed_pseudogene Mus_musculus 0 730

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