C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat transmembrane neuronal 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091636 Lrrtm2-201 ENSMUSG00000071862 10090 - 18:35209011-35215024 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091636
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091636 0.031±0.02 0.083±0.04 2.229±0.69 0.065±0.02 0.062±0.04 0.066±0.02 0.102±0.03 0.032±0.00 0.072±0.06 0.005±0.00 0.064±0.05 0.086±0.08 0.011±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DA CIL_0005DA_0002 CGP 18:34937414-35254773
CIL_00062R CIL_00062R_0003 CGP 18:35118888-35254773
CIL_0005D1 CIL_0005D1_0002 CGP 18:35209011-35498925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002091 IGI negative regulation of receptor internalization
GO:0016021 ISS integral component of membrane
GO:0030054 IEA cell junction
GO:0042043 IEA neurexin family protein binding
GO:0045211 IEA postsynaptic membrane
GO:0050808 IGI synapse organization
GO:0060076 IEA excitatory synapse
GO:0060291 IGI long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274711 LRRTM2-001 protein_coding Homo_sapiens 0 3598
ENST00000518381 CTNNA1-038 protein_coding Homo_sapiens 0 213
ENST00000518785 LRRTM2-002 protein_coding Homo_sapiens 0 2196
ENST00000520260 CTNNA1-024 protein_coding Homo_sapiens 4e-30 135
ENST00000521094 LRRTM2-003 protein_coding Homo_sapiens 0 959
ENST00000522013 CTNNA1-023 protein_coding Homo_sapiens 0 191
ENST00000523537 LRRTM2-004 processed_transcript Homo_sapiens 0 507

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