C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005DA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000113013-ENSG00000044115 CGP 9606 5:138554882-138935034
GeneTranscriptPositionBiotype
ENSG00000044115 (CTNNA1)
catenin (cadherin-associated protein), alpha 1, 102kDa 		ENST00000302763 (CTNNA1-001) 138753423-138935034 protein_coding
ENST00000517533 (CTNNA1-027) 138875433-138917819 protein_coding
ENST00000517534 (CTNNA1-020) 138827627-138887732 retained_intron
ENST00000517656 (CTNNA1-029) 138875440-138887574 protein_coding
ENST00000517904 (CTNNA1-042) 138886229-138904792 retained_intron
ENST00000517980 (CTNNA1-015) 138610967-138810089 protein_coding
ENST00000518263 (CTNNA1-033) 138875435-138881138 processed_transcript
ENST00000518381 (CTNNA1-038) 138874038-138904387 protein_coding
ENST00000518585 (CTNNA1-018) 138790926-138824692 processed_transcript
ENST00000518825 (CTNNA1-006) 138781923-138934831 protein_coding
ENST00000518910 (CTNNA1-014) 138753431-138824734 protein_coding
ENST00000518919 (CTNNA1-045) 138811959-138824683 retained_intron
ENST00000519113 (CTNNA1-010) 138753661-138810155 protein_coding
ENST00000519116 (CTNNA1-028) 138875464-138904437 protein_coding
ENST00000519309 (CTNNA1-012) 138753446-138824629 nonsense_mediated_decay
ENST00000519489 (CTNNA1-041) 138924589-138925491 retained_intron
ENST00000519634 (CTNNA1-031) 138875433-138887608 protein_coding
ENST00000519768 (CTNNA1-035) 138875437-138887517 protein_coding
ENST00000520158 (CTNNA1-011) 138754369-138824588 protein_coding
ENST00000520260 (CTNNA1-024) 138875266-138887552 protein_coding
ENST00000520339 (CTNNA1-008) 138753418-138783374 protein_coding
ENST00000520400 (CTNNA1-021) 138870275-138917818 processed_transcript
ENST00000520520 (CTNNA1-040) 138930638-138934162 protein_coding
ENST00000520522 (CTNNA1-037) 138880195-138887608 protein_coding
ENST00000520865 (CTNNA1-026) 138875432-138887566 protein_coding
ENST00000521368 (CTNNA1-044) 138904399-138930509 nonsense_mediated_decay
ENST00000521387 (CTNNA1-039) 138924530-138931074 retained_intron
ENST00000521640 (CTNNA1-034) 138875443-138887578 protein_coding
ENST00000521683 (CTNNA1-036) 138875440-138904375 protein_coding
ENST00000521724 (CTNNA1-003) 138753421-138934213 nonsense_mediated_decay
ENST00000521941 (CTNNA1-009) 138753445-138762098 processed_transcript
ENST00000522013 (CTNNA1-023) 138875230-138917779 protein_coding
ENST00000522052 (CTNNA1-043) 138875488-138917854 nonsense_mediated_decay
ENST00000522227 (CTNNA1-017) 138610978-138810105 protein_coding
ENST00000522730 (CTNNA1-046) 138824768-138828232 retained_intron
ENST00000522792 (CTNNA1-005) 138931901-138935033 retained_intron
ENST00000523275 (CTNNA1-019) 138824677-138887521 nonsense_mediated_decay
ENST00000523298 (CTNNA1-030) 138875400-138917793 protein_coding
ENST00000523685 (CTNNA1-025) 138875433-138917847 protein_coding
ENST00000523912 (CTNNA1-007) 138753097-138810204 protein_coding
ENST00000524127 (CTNNA1-016) 138663837-138783353 protein_coding
ENST00000524292 (CTNNA1-032) 138875399-138881106 processed_transcript
ENST00000540387 (CTNNA1-201) 138875653-138935028 protein_coding
ENSG00000113013 (HSPA9)
heat shock 70kDa protein 9 (mortalin) 		ENST00000297185 (HSPA9-001) 138554882-138575444 protein_coding
ENST00000501917 (HSPA9-012) 138555360-138566718 processed_transcript
ENST00000504810 (HSPA9-010) 138568968-138575166 protein_coding
ENST00000504902 (HSPA9-008) 138567001-138575340 nonsense_mediated_decay
ENST00000505110 (HSPA9-004) 138568966-138575401 nonsense_mediated_decay
ENST00000506477 (HSPA9-005) 138570799-138575411 retained_intron
ENST00000507097 (HSPA9-002) 138557342-138575401 retained_intron
ENST00000507115 (HSPA9-003) 138568925-138575403 nonsense_mediated_decay
ENST00000507886 (HSPA9-011) 138570977-138575009 protein_coding
ENST00000508003 (HSPA9-006) 138559720-138561789 retained_intron
ENST00000512328 (HSPA9-007) 138556047-138558631 nonsense_mediated_decay
ENST00000523929 (HSPA9-013) 138558553-138566711 nonsense_mediated_decay
ENST00000524109 (HSPA9-014) 138555827-138557891 retained_intron
ENSG00000146006 (LRRTM2)
leucine rich repeat transmembrane neuronal 2 		ENST00000274711 (LRRTM2-001) 138868923-138875290 protein_coding
ENST00000518785 (LRRTM2-002) 138872632-138875368 protein_coding
ENST00000521094 (LRRTM2-003) 138872455-138875304 protein_coding
ENST00000523537 (LRRTM2-004) 138874046-138875341 processed_transcript
ENSG00000206989 (SNORD63)
small nucleolar RNA, C/D box 63 		ENST00000384262 (SNORD63-201) 138561043-138561110 snoRNA
ENSG00000222937 (SNORD63)
Small nucleolar RNA SNORD63 		ENST00000411005 (SNORD63.1-201) 138558970-138559039 snoRNA
ENSG00000232174 (CTB-164L20.1)
 ENST00000475257 (CTB-164L20.1-001) 138620329-138620964 processed_pseudogene
ENSG00000238745 (snoU13)
Small nucleolar RNA U13 		ENST00000459407 (snoU13.1-217) 138623479-138623582 snoRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005DA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024359-ENSMUSG00000037815 CGP 10090 18:34937414-35254773
GeneTranscriptPositionBiotype
ENSMUSG00000024359 (Hspa9)
heat shock protein 9 		ENSMUST00000025217 (Hspa9-001) 34937414-34954357 protein_coding
ENSMUST00000172829 (Hspa9-003) 34938696-34940862 retained_intron
ENSMUST00000173701 (Hspa9-002) 34938267-34939310 retained_intron
ENSMUST00000173806 (Hspa9-004) 34948172-34951573 retained_intron
ENSMUSG00000037815 (Ctnna1)
catenin (cadherin associated protein), alpha 1 		ENSMUST00000042345 (Ctnna1-201) 35118888-35254773 protein_coding
ENSMUSG00000065904 (Gm26109)
predicted gene, 26109 		ENSMUST00000083970 (Gm26109-201) 34942644-34942713 snoRNA
ENSMUSG00000071862 (Lrrtm2)
leucine rich repeat transmembrane neuronal 2 		ENSMUST00000091636 (Lrrtm2-201) 35209011-35215024 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
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Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005DA_0001ENSG00000044115ENST00000302763ENST00000517533ENST00000517534ENST00000517656ENST00000517904ENST00000517980ENST00000518263ENST00000518381ENST00000518585ENST00000518825ENST00000518910ENST00000518919ENST00000519113ENST00000519116ENST00000519309ENST00000519489ENST00000519634ENST00000519768ENST00000520158ENST00000520260ENST00000520339ENST00000520400ENST00000520520ENST00000520522ENST00000520865ENST00000521368ENST00000521387ENST00000521640ENST00000521683ENST00000521724ENST00000521941ENST00000522013ENST00000522052ENST00000522227ENST00000522730ENST00000522792ENST00000523275ENST00000523298ENST00000523685ENST00000523912ENST00000524127ENST00000524292ENST00000540387ENSG00000113013ENST00000297185ENST00000501917ENST00000504810ENST00000504902ENST00000505110ENST00000506477ENST00000507097ENST00000507115ENST00000507886ENST00000508003ENST00000512328ENST00000523929ENST00000524109ENSG00000146006ENST00000274711ENST00000518785ENST00000521094ENST00000523537ENSG00000206989ENST00000384262ENSG00000222937ENST00000411005ENSG00000232174ENST00000475257ENSG00000238745ENST00000459407CIL_0005DA_0002ENSMUSG00000024359ENSMUST00000025217ENSMUST00000172829ENSMUST00000173701ENSMUST00000173806ENSMUSG00000037815ENSMUST00000042345ENSMUSG00000065904ENSMUST00000083970ENSMUSG00000071862ENSMUST00000091636
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005DA_0001ENSG00000044115ENST00000302763ENST00000518825ENST00000520158ENST00000521368ENST00000521387ENST00000521724ENST00000540387ENSG00000113013ENST00000297185ENST00000507097ENST00000507115ENST00000512328ENST00000524109ENSG00000146006ENST00000274711ENST00000518785ENSG00000206989ENST00000384262ENSG00000222937ENST00000411005ENSG00000232174ENST00000475257ENSG00000238745ENST00000459407CIL_0005DA_0002ENSMUSG00000024359ENSMUST00000025217ENSMUSG00000037815ENSMUST00000042345ENSMUSG00000065904ENSMUST00000083970ENSMUSG00000071862ENSMUST00000091636
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000044115 ENST00000302763 14.793±0.00 14.392±0.00 7.228±0.00 11.789±0.00 15.939±6.62 19.581±0.00 25.268±17.21 15.272±8.27 9.068±4.34 33.297±20.19 11.959±2.24 35.567±29.69 32.320±11.97 8.430±0.00
ENST00000517533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518825 38.548±0.00 27.078±0.00 N/A 35.525±0.00 37.547±0.00 46.143±0.00 30.866±0.00 41.654±0.00 9.616±0.00 51.423±0.00 20.288±0.00 N/A N/A 26.590±0.00
ENST00000518910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520158 N/A N/A 17.463±0.00 N/A 40.537±0.00 N/A 19.033±0.00 N/A N/A N/A N/A 29.992±0.00 N/A N/A
ENST00000520260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 91.163±0.00 125.179±0.00 35.031±0.00
ENST00000521387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.134±0.00 N/A 19.877±0.00
ENST00000521640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521724 25.933±0.00 N/A 6.498±0.00 N/A 20.391±5.88 16.677±0.00 7.426±0.00 13.240±7.82 5.322±0.00 23.767±14.44 13.161±0.00 10.069±3.24 27.706±0.00 12.375±0.00
ENST00000521941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540387 N/A 17.041±0.00 N/A N/A N/A N/A N/A 23.923±0.00 6.757±0.00 N/A N/A 15.380±0.00 N/A 9.401±0.00
ENSG00000113013 ENST00000297185 28.670±0.00 44.458±0.00 8.950±0.00 35.196±15.98 8.931±0.20 5.809±0.51 37.619±26.23 8.708±1.33 13.382±0.00 21.856±12.54 46.161±24.89 23.256±22.46 7.619±0.42 15.312±0.00
ENST00000501917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.846±0.00 N/A N/A N/A
ENST00000507115 N/A N/A N/A N/A 21.708±0.00 30.309±0.00 N/A 43.399±0.00 N/A N/A 40.841±0.00 N/A N/A N/A
ENST00000507886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512328 38.249±0.00 N/A N/A 73.813±0.00 N/A 31.727±0.00 N/A N/A N/A N/A N/A 39.850±0.00 53.619±0.00 47.825±0.25
ENST00000523929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.662±0.00 23.014±0.00 25.038±0.00
ENSG00000146006 ENST00000274711 N/A N/A N/A 7.635±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518785 N/A N/A N/A 13.323±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206989 ENST00000384262 N/A N/A N/A N/A 0.709±0.00 N/A N/A 1.773±0.00 N/A N/A N/A 55.856±0.00 N/A N/A
ENSG00000222937 ENST00000411005 3.374±0.00 11.334±0.00 N/A 0.843±0.00 3.337±0.00 2.343±0.00 N/A 1.633±0.00 N/A N/A N/A 66.135±0.00 N/A 5.668±0.00
ENSG00000232174 ENST00000475257 0.027±0.00 N/A N/A N/A N/A 0.110±0.00 0.039±0.01 0.059±0.00 N/A 0.148±0.00 0.050±0.00 N/A N/A N/A
ENSG00000238745 ENST00000459407 N/A N/A N/A N/A N/A N/A N/A N/A 0.803±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024359 ENSMUST00000025217 54.337±2.97 272.215±21.97 48.365±0.52 45.905±19.91 55.222±8.08 31.701±2.25 91.906±6.74 90.474±7.70 87.380±10.29 26.214±1.34 100.546±16.30 67.190±27.65 108.772±46.50 40.743±5.49
ENSMUST00000172829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037815 ENSMUST00000042345 32.302±7.59 30.063±2.58 69.578±10.17 15.053±3.43 22.654±6.22 65.858±3.32 72.752±4.98 39.662±2.57 16.774±2.20 92.410±1.25 10.276±0.75 51.882±33.79 126.767±67.79 4.899±3.13
ENSMUSG00000065904 ENSMUST00000083970 N/A N/A N/A 788.339±0.00 N/A N/A N/A N/A N/A N/A N/A 770.211±0.00 3941.270±0.00 N/A
ENSMUSG00000071862 ENSMUST00000091636 0.031±0.02 0.083±0.04 N/A 2.229±0.69 0.065±0.02 0.062±0.04 0.066±0.02 0.102±0.03 0.032±0.00 0.072±0.06 0.005±0.00 0.064±0.05 0.086±0.08 0.011±0.00

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