C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00062R_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000077846-ENSDARG00000077846 CGP 7955 24:35832742-36171912
GeneTranscriptPositionBiotype
ENSDARG00000071374 (lrrtm2)
leucine rich repeat transmembrane neuronal 2 		ENSDART00000105477 (lrrtm2-201) 35952665-35954296 protein_coding
ENSDARG00000077846 (ctnna1)
catenin (cadherin-associated protein), alpha 1 		ENSDART00000052441 (ctnna1-001) 35832742-36025382 protein_coding
ENSDART00000138627 (ctnna1-002) 36050838-36171912 protein_coding
ENSDART00000140050 (ctnna1-201) 36050849-36169038 protein_coding
ENSDARG00000090425 (lrrtm2)
leucine rich repeat transmembrane neuronal 2 		ENSDART00000130532 (lrrtm2-202) 36099036-36100667 protein_coding
CIL_00062R_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000044115-ENSG00000044115 CGP 9606 5:138610967-138935034
GeneTranscriptPositionBiotype
ENSG00000044115 (CTNNA1)
catenin (cadherin-associated protein), alpha 1, 102kDa 		ENST00000302763 (CTNNA1-001) 138753423-138935034 protein_coding
ENST00000517533 (CTNNA1-027) 138875433-138917819 protein_coding
ENST00000517534 (CTNNA1-020) 138827627-138887732 retained_intron
ENST00000517656 (CTNNA1-029) 138875440-138887574 protein_coding
ENST00000517904 (CTNNA1-042) 138886229-138904792 retained_intron
ENST00000517980 (CTNNA1-015) 138610967-138810089 protein_coding
ENST00000518263 (CTNNA1-033) 138875435-138881138 processed_transcript
ENST00000518381 (CTNNA1-038) 138874038-138904387 protein_coding
ENST00000518585 (CTNNA1-018) 138790926-138824692 processed_transcript
ENST00000518825 (CTNNA1-006) 138781923-138934831 protein_coding
ENST00000518910 (CTNNA1-014) 138753431-138824734 protein_coding
ENST00000518919 (CTNNA1-045) 138811959-138824683 retained_intron
ENST00000519113 (CTNNA1-010) 138753661-138810155 protein_coding
ENST00000519116 (CTNNA1-028) 138875464-138904437 protein_coding
ENST00000519309 (CTNNA1-012) 138753446-138824629 nonsense_mediated_decay
ENST00000519489 (CTNNA1-041) 138924589-138925491 retained_intron
ENST00000519634 (CTNNA1-031) 138875433-138887608 protein_coding
ENST00000519768 (CTNNA1-035) 138875437-138887517 protein_coding
ENST00000520158 (CTNNA1-011) 138754369-138824588 protein_coding
ENST00000520260 (CTNNA1-024) 138875266-138887552 protein_coding
ENST00000520339 (CTNNA1-008) 138753418-138783374 protein_coding
ENST00000520400 (CTNNA1-021) 138870275-138917818 processed_transcript
ENST00000520520 (CTNNA1-040) 138930638-138934162 protein_coding
ENST00000520522 (CTNNA1-037) 138880195-138887608 protein_coding
ENST00000520865 (CTNNA1-026) 138875432-138887566 protein_coding
ENST00000521368 (CTNNA1-044) 138904399-138930509 nonsense_mediated_decay
ENST00000521387 (CTNNA1-039) 138924530-138931074 retained_intron
ENST00000521640 (CTNNA1-034) 138875443-138887578 protein_coding
ENST00000521683 (CTNNA1-036) 138875440-138904375 protein_coding
ENST00000521724 (CTNNA1-003) 138753421-138934213 nonsense_mediated_decay
ENST00000521941 (CTNNA1-009) 138753445-138762098 processed_transcript
ENST00000522013 (CTNNA1-023) 138875230-138917779 protein_coding
ENST00000522052 (CTNNA1-043) 138875488-138917854 nonsense_mediated_decay
ENST00000522227 (CTNNA1-017) 138610978-138810105 protein_coding
ENST00000522730 (CTNNA1-046) 138824768-138828232 retained_intron
ENST00000522792 (CTNNA1-005) 138931901-138935033 retained_intron
ENST00000523275 (CTNNA1-019) 138824677-138887521 nonsense_mediated_decay
ENST00000523298 (CTNNA1-030) 138875400-138917793 protein_coding
ENST00000523685 (CTNNA1-025) 138875433-138917847 protein_coding
ENST00000523912 (CTNNA1-007) 138753097-138810204 protein_coding
ENST00000524127 (CTNNA1-016) 138663837-138783353 protein_coding
ENST00000524292 (CTNNA1-032) 138875399-138881106 processed_transcript
ENST00000540387 (CTNNA1-201) 138875653-138935028 protein_coding
ENSG00000146006 (LRRTM2)
leucine rich repeat transmembrane neuronal 2 		ENST00000274711 (LRRTM2-001) 138868923-138875290 protein_coding
ENST00000518785 (LRRTM2-002) 138872632-138875368 protein_coding
ENST00000521094 (LRRTM2-003) 138872455-138875304 protein_coding
ENST00000523537 (LRRTM2-004) 138874046-138875341 processed_transcript
ENSG00000232174 (CTB-164L20.1)
 ENST00000475257 (CTB-164L20.1-001) 138620329-138620964 processed_pseudogene
ENSG00000238745 (snoU13)
Small nucleolar RNA U13 		ENST00000459407 (snoU13.1-217) 138623479-138623582 snoRNA
CIL_00062R_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037815-ENSMUSG00000037815 CGP 10090 18:35118888-35254773
GeneTranscriptPositionBiotype
ENSMUSG00000037815 (Ctnna1)
catenin (cadherin associated protein), alpha 1 		ENSMUST00000042345 (Ctnna1-201) 35118888-35254773 protein_coding
ENSMUSG00000071862 (Lrrtm2)
leucine rich repeat transmembrane neuronal 2 		ENSMUST00000091636 (Lrrtm2-201) 35209011-35215024 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00062R_0001ENSDARG00000071374ENSDART00000105477ENSDARG00000077846ENSDART00000052441ENSDART00000138627ENSDART00000140050ENSDARG00000090425ENSDART00000130532CIL_00062R_0002ENSG00000044115ENST00000302763ENST00000517533ENST00000517534ENST00000517656ENST00000517904ENST00000517980ENST00000518263ENST00000518381ENST00000518585ENST00000518825ENST00000518910ENST00000518919ENST00000519113ENST00000519116ENST00000519309ENST00000519489ENST00000519634ENST00000519768ENST00000520158ENST00000520260ENST00000520339ENST00000520400ENST00000520520ENST00000520522ENST00000520865ENST00000521368ENST00000521387ENST00000521640ENST00000521683ENST00000521724ENST00000521941ENST00000522013ENST00000522052ENST00000522227ENST00000522730ENST00000522792ENST00000523275ENST00000523298ENST00000523685ENST00000523912ENST00000524127ENST00000524292ENST00000540387ENSG00000146006ENST00000274711ENST00000518785ENST00000521094ENST00000523537ENSG00000232174ENST00000475257ENSG00000238745ENST00000459407CIL_00062R_0003ENSMUSG00000037815ENSMUST00000042345ENSMUSG00000071862ENSMUST00000091636
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00062R_0001ENSDARG00000071374ENSDART00000105477ENSDARG00000077846ENSDART00000052441ENSDART00000138627ENSDART00000140050ENSDARG00000090425ENSDART00000130532CIL_00062R_0002ENSG00000044115ENST00000302763ENST00000518825ENST00000520158ENST00000521368ENST00000521387ENST00000521724ENST00000540387ENSG00000146006ENST00000274711ENST00000518785ENSG00000232174ENST00000475257ENSG00000238745ENST00000459407CIL_00062R_0003ENSMUSG00000037815ENSMUST00000042345ENSMUSG00000071862ENSMUST00000091636
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000071374 ENSDART00000105477 N/A N/A N/A 0.676±0.64 N/A N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A N/A
ENSDARG00000077846 ENSDART00000052441 N/A N/A N/A 1.533±0.86 N/A N/A 42.330±23.15 18.542±12.84 2.307±0.00 N/A 2.805±0.00 N/A N/A N/A
ENSDART00000138627 N/A N/A N/A N/A N/A N/A 1.801±0.00 1.030±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000140050 N/A N/A N/A 0.179±0.00 N/A N/A 0.565±0.00 N/A 0.135±0.00 N/A 0.026±0.00 N/A N/A N/A
ENSDARG00000090425 ENSDART00000130532 N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000044115 ENST00000302763 14.793±0.00 14.392±0.00 7.228±0.00 11.789±0.00 15.939±6.62 19.581±0.00 25.268±17.21 15.272±8.27 9.068±4.34 33.297±20.19 11.959±2.24 35.567±29.69 32.320±11.97 8.430±0.00
ENST00000517533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518825 38.548±0.00 27.078±0.00 N/A 35.525±0.00 37.547±0.00 46.143±0.00 30.866±0.00 41.654±0.00 9.616±0.00 51.423±0.00 20.288±0.00 N/A N/A 26.590±0.00
ENST00000518910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520158 N/A N/A 17.463±0.00 N/A 40.537±0.00 N/A 19.033±0.00 N/A N/A N/A N/A 29.992±0.00 N/A N/A
ENST00000520260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 91.163±0.00 125.179±0.00 35.031±0.00
ENST00000521387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.134±0.00 N/A 19.877±0.00
ENST00000521640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521724 25.933±0.00 N/A 6.498±0.00 N/A 20.391±5.88 16.677±0.00 7.426±0.00 13.240±7.82 5.322±0.00 23.767±14.44 13.161±0.00 10.069±3.24 27.706±0.00 12.375±0.00
ENST00000521941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540387 N/A 17.041±0.00 N/A N/A N/A N/A N/A 23.923±0.00 6.757±0.00 N/A N/A 15.380±0.00 N/A 9.401±0.00
ENSG00000146006 ENST00000274711 N/A N/A N/A 7.635±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518785 N/A N/A N/A 13.323±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232174 ENST00000475257 0.027±0.00 N/A N/A N/A N/A 0.110±0.00 0.039±0.01 0.059±0.00 N/A 0.148±0.00 0.050±0.00 N/A N/A N/A
ENSG00000238745 ENST00000459407 N/A N/A N/A N/A N/A N/A N/A N/A 0.803±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037815 ENSMUST00000042345 32.302±7.59 30.063±2.58 69.578±10.17 15.053±3.43 22.654±6.22 65.858±3.32 72.752±4.98 39.662±2.57 16.774±2.20 92.410±1.25 10.276±0.75 51.882±33.79 126.767±67.79 4.899±3.13
ENSMUSG00000071862 ENSMUST00000091636 0.031±0.02 0.083±0.04 N/A 2.229±0.69 0.065±0.02 0.062±0.04 0.066±0.02 0.102±0.03 0.032±0.00 0.072±0.06 0.005±0.00 0.064±0.05 0.086±0.08 0.011±0.00

Loading