C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuroepithelial cell transforming gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091853 Net1-201 ENSMUSG00000021215 10090 - 13:3882565-3918220 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverOvaryPlacentaTestisENSMUST00000091853
Transcript ID Adrenal Brain Breast Colon Liver Ovary Placenta Testis
ENSMUST00000091853 2.252±0.59 1.275±0.02 3.910±0.00 4.550±0.00 3.328±1.23 2.879±0.84 5.738±1.90 3.717±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HB CIL_0008HB_0002 VISTA 13:3426204-4027216
CIL_00097T CIL_00097T_0002 VISTA 13:3441069-4044545

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0017049 IDA GTP-Rho binding
GO:0032321 ISS positive regulation of Rho GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0043065 ISS positive regulation of apoptotic process
GO:0051451 IGI myoblast migration
GO:0070301 ISS cellular response to hydrogen peroxide
GO:0071479 ISS cellular response to ionizing radiation
GO:1900026 IDA positive regulation of substrate adhesion-dependent cell spreading

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355029 NET1-005 protein_coding Homo_sapiens 0 2002
ENST00000380359 NET1-006 protein_coding Homo_sapiens 0 1631
ENST00000449083 NET1-003 protein_coding Homo_sapiens 0 490
ENST00000484741 NET1-004 processed_transcript Homo_sapiens 0 603
ENST00000486354 NET1-001 processed_transcript Homo_sapiens 0 311

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