C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuroepithelial cell transforming 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380359 NET1-006 ENSG00000173848 9606 + 10:5446611-5458463 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380359
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380359 11.355±0.00 8.266±0.00 4.569±0.00 4.825±0.76 19.835±5.93 18.153±2.40 1.662±0.50 15.400±1.20 11.789±8.44 5.663±1.15 2.455±0.00 43.697±35.87 31.964±9.72 7.923±3.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097T CIL_00097T_0001 VISTA 10:5274654-5878045
CIL_0008HB CIL_0008HB_0001 VISTA 10:5286025-5887846

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 NAS regulation of cell growth
GO:0005085 TAS guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005829 TAS cytosol
GO:0007165 TAS signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0032321 IMP positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction
GO:0043065 IDA positive regulation of apoptotic process
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0070301 IDA cellular response to hydrogen peroxide
GO:0071479 IDA cellular response to ionizing radiation
GO:0097190 TAS apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099946 Net1-202 protein_coding Mus_musculus 0 1788
ENSMUST00000091853 Net1-201 protein_coding Mus_musculus 0 1631

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