C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuroepithelial cell transforming 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355029 NET1-005 ENSG00000173848 9606 + 10:5412551-5458463 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartLiverLungMuscleOvaryPlacentaTestisENST00000355029
Transcript ID Adipose Adrenal Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000355029 2.466±0.00 2.760±0.00 2.870±1.42 0.918±0.42 2.548±0.00 1.670±0.00 3.598±2.29 19.367±15.78 5.533±0.00 7.075±2.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097T CIL_00097T_0001 VISTA 10:5274654-5878045
CIL_0008HB CIL_0008HB_0001 VISTA 10:5286025-5887846

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 NAS regulation of cell growth
GO:0005085 TAS guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0007165 TAS signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0017049 IEA GTP-Rho binding
GO:0032321 IMP positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction
GO:0043065 IDA positive regulation of apoptotic process
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0051451 IEA myoblast migration
GO:0070301 IDA cellular response to hydrogen peroxide
GO:0071479 IDA cellular response to ionizing radiation
GO:0097190 TAS apoptotic signaling pathway
GO:1900026 IEA positive regulation of substrate adhesion-dependent cell spreading

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091853 Net1-201 protein_coding Mus_musculus 0 2002
ENSMUST00000099946 Net1-202 protein_coding Mus_musculus 0 1631

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