C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 43
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577716 RNF43-001 ENSG00000108375 9606 - 17:58353676-58417582 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyOvaryPlacentaENST00000577716
Transcript ID Kidney Ovary Placenta
ENST00000577716 1.335±0.00 9.762±0.00 4.067±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0004871 IEA signal transducer activity
GO:0005109 IPI frizzled binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005887 IDA integral component of plasma membrane
GO:0007165 IEA signal transduction
GO:0008270 IEA zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030178 IMP negative regulation of Wnt signaling pathway
GO:0038018 IDA Wnt receptor catabolic process
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0046872 IEA metal ion binding
GO:0072089 ISS stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165679 Rnf43-201 protein_coding Mus_musculus 0 2422
ENSMUST00000092800 Rnf43-001 protein_coding Mus_musculus 0 2422
ENSMUST00000040089 Rnf43-002 protein_coding Mus_musculus 0 1977
ENSMUST00000121782 Rnf43-010 protein_coding Mus_musculus 0 1810
ENSMUST00000134684 Rnf43-007 retained_intron Mus_musculus 0 1153
ENSMUST00000123658 Rnf43-008 processed_transcript Mus_musculus 0 568
ENSMUST00000162740 Rnf43-009 retained_intron Mus_musculus 0 483
ENSMUST00000124625 Rnf43-006 retained_intron Mus_musculus 0 427

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