C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synergin, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092834 Synrg-001 ENSMUSG00000034940 10090 + 11:83964428-84044578 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092834
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092834 6.619±0.67 3.258±1.07 6.663±0.28 8.185±0.83 3.061±1.05 3.538±1.62 1.719±1.00 4.734±2.77 1.967±1.07 9.274±4.29 1.779±0.40 2.966±1.74 1.926±1.28 4.710±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005794 IEA Golgi apparatus
GO:0006897 IEA endocytosis
GO:0008150 ND biological_process
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000154841 synrg-003 protein_coding Danio_rerio 0 455
ENSDART00000154219 synrg-006 protein_coding Danio_rerio 0 219
ENSDART00000115129 synrg-001 protein_coding Danio_rerio 2e-28 134
ENST00000610513 SYNRG-201 protein_coding Homo_sapiens 0 1090
ENST00000611910 SYNRG-015 processed_transcript Homo_sapiens 0 1256
ENST00000612223 SYNRG-001 protein_coding Homo_sapiens 0 1648
ENST00000613407 SYNRG-202 protein_coding Homo_sapiens 0 2355
ENST00000614000 SYNRG-003 retained_intron Homo_sapiens 0 785
ENST00000614196 SYNRG-018 protein_coding Homo_sapiens 0 324
ENST00000614941 SYNRG-014 protein_coding Homo_sapiens 0 1090
ENST00000616179 SYNRG-012 protein_coding Homo_sapiens 0 2355
ENST00000618176 SYNRG-203 protein_coding Homo_sapiens 0 2355
ENST00000618402 SYNRG-204 protein_coding Homo_sapiens 0 1648
ENST00000618829 SYNRG-007 retained_intron Homo_sapiens 0 1653
ENST00000619541 SYNRG-013 protein_coding Homo_sapiens 0 2370
ENST00000619914 SYNRG-009 retained_intron Homo_sapiens 0 449
ENST00000619976 SYNRG-011 processed_transcript Homo_sapiens 0 710
ENST00000620424 SYNRG-016 protein_coding Homo_sapiens 0 527
ENST00000621136 SYNRG-006 protein_coding Homo_sapiens 0 2355
ENST00000621605 SYNRG-017 processed_transcript Homo_sapiens 0 270
ENST00000622045 SYNRG-008 protein_coding Homo_sapiens 0 2355

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