C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 44
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094698 Rbm44-001 ENSMUSG00000070732 10090 + 1:91145103-91170795 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000094698
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000094698 0.038±0.01 0.042±0.00 0.017±0.00 0.009±0.00 0.032±0.00 0.009±0.00 0.015±0.01 0.123±0.09 0.015±0.00 0.085±0.04 0.160±0.15 5.804±3.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0003XV CIL_0003XV_0002 CGP 1:90998737-91170795
CIL_0003XU CIL_0003XU_0002 CGP 1:91145089-91225196

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008150 ND biological_process
GO:0042803 IDA protein homodimerization activity
GO:0045171 IDA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316997 RBM44-201 protein_coding Homo_sapiens 0 891
ENST00000409864 RBM44-004 protein_coding Homo_sapiens 0 883
ENST00000480583 RBM44-001 retained_intron Homo_sapiens 0 797
ENST00000611254 RBM44-202 protein_coding Homo_sapiens 0 789

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