C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003XU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000177483-ENSG00000132329 CGP 9606 2:237798389-237912114
GeneTranscriptPositionBiotype
ENSG00000124831 (LRRFIP1)
leucine rich repeat (in FLII) interacting protein 1 		ENST00000244815 (LRRFIP1-001) 237692216-237765915 protein_coding
ENST00000289175 (LRRFIP1-004) 237692145-237765279 protein_coding
ENST00000308482 (LRRFIP1-002) 237627576-237780315 protein_coding
ENST00000392000 (LRRFIP1-003) 237692339-237764961 protein_coding
ENST00000420665 (LRRFIP1-005) 237692333-237749300 protein_coding
ENST00000464608 (LRRFIP1-015) 237771944-237779561 retained_intron
ENST00000465870 (LRRFIP1-011) 237627607-237722131 retained_intron
ENST00000468950 (LRRFIP1-009) 237769626-237774227 processed_transcript
ENST00000473815 (LRRFIP1-007) 237692494-237735676 processed_transcript
ENST00000474195 (LRRFIP1-010) 237771982-237780309 retained_intron
ENST00000478958 (LRRFIP1-008) 237768197-237780315 retained_intron
ENST00000483443 (LRRFIP1-014) 237756095-237770776 retained_intron
ENST00000489295 (LRRFIP1-013) 237683404-237684473 processed_transcript
ENST00000489603 (LRRFIP1-016) 237769732-237813682 processed_transcript
ENST00000498053 (LRRFIP1-012) 237683404-237756175 processed_transcript
ENSG00000132329 (RAMP1)
receptor (G protein-coupled) activity modifying protein 1 		ENST00000254661 (RAMP1-001) 237859544-237912114 protein_coding
ENST00000403885 (RAMP1-002) 237859976-237912010 protein_coding
ENST00000404910 (RAMP1-003) 237858893-237912010 protein_coding
ENST00000409726 (RAMP1-004) 237859623-237911956 protein_coding
ENSG00000177483 (RBM44)
RNA binding motif protein 44 		ENST00000316997 (RBM44-201) 237798745-237842807 protein_coding
ENST00000409864 (RBM44-004) 237799178-237834437 protein_coding
ENST00000444524 (RBM44-003) 237798752-237820336 processed_transcript
ENST00000480583 (RBM44-001) 237798389-237842808 retained_intron
ENST00000491996 (RBM44-005) 237833993-237834871 retained_intron
ENST00000611254 (RBM44-202) 237813664-237841869 protein_coding
CIL_0003XU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000070732-ENSMUSG00000034353 CGP 10090 1:91145089-91225196
GeneTranscriptPositionBiotype
ENSMUSG00000034353 (Ramp1)
receptor (calcitonin) activity modifying protein 1 		ENSMUST00000097648 (Ramp1-001) 91180046-91225196 protein_coding
ENSMUST00000165855 (Ramp1-002) 91179822-91206790 protein_coding
ENSMUST00000188475 (Ramp1-003) 91180042-91206790 protein_coding
ENSMUSG00000070732 (Rbm44)
RNA binding motif protein 44 		ENSMUST00000094698 (Rbm44-001) 91145103-91170795 protein_coding
ENSMUST00000185229 (Rbm44-004) 91168629-91170293 retained_intron
ENSMUST00000188818 (Rbm44-003) 91145101-91152725 protein_coding
ENSMUST00000190965 (Rbm44-002) 91145089-91147758 retained_intron
ENSMUSG00000100018 (RP24-148E21.3)
predicted gene 7776 		ENSMUST00000191211 (RP24-148E21.3-001) 91171429-91172148 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003XU_0001ENSG00000124831ENST00000244815ENST00000289175ENST00000308482ENST00000392000ENST00000420665ENST00000464608ENST00000465870ENST00000468950ENST00000473815ENST00000474195ENST00000478958ENST00000483443ENST00000489295ENST00000489603ENST00000498053ENSG00000132329ENST00000254661ENST00000403885ENST00000404910ENST00000409726ENSG00000177483ENST00000316997ENST00000409864ENST00000444524ENST00000480583ENST00000491996ENST00000611254CIL_0003XU_0002ENSMUSG00000034353ENSMUST00000097648ENSMUST00000165855ENSMUST00000188475ENSMUSG00000070732ENSMUST00000094698ENSMUST00000185229ENSMUST00000188818ENSMUST00000190965ENSMUSG00000100018ENSMUST00000191211
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003XU_0001ENSG00000124831ENST00000244815ENST00000289175ENST00000308482ENST00000392000ENST00000478958ENSG00000132329ENST00000254661ENST00000403885ENST00000404910ENST00000409726ENSG00000177483ENST00000316997ENST00000409864ENST00000611254CIL_0003XU_0002ENSMUSG00000034353ENSMUST00000097648ENSMUST00000165855ENSMUST00000188475ENSMUSG00000070732ENSMUST00000094698ENSMUST00000185229ENSMUST00000188818ENSMUST00000190965ENSMUSG00000100018ENSMUST00000191211
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124831 ENST00000244815 N/A N/A 1.339±0.00 1.961±0.00 4.192±0.00 N/A 3.019±0.00 5.831±3.16 6.536±0.00 15.237±0.00 N/A 6.364±0.00 3.300±0.00 N/A
ENST00000289175 6.713±0.00 9.716±0.00 3.063±0.00 2.797±0.00 3.436±0.00 6.028±1.28 3.445±0.00 4.105±1.97 3.605±1.07 7.863±0.00 N/A 13.729±13.94 16.486±14.11 5.180±0.00
ENST00000308482 17.711±0.00 16.830±0.00 N/A 5.911±4.01 N/A N/A 16.935±9.23 N/A N/A N/A 13.256±10.64 7.045±0.37 N/A 11.344±0.00
ENST00000392000 N/A N/A 1.255±0.00 N/A 2.134±0.00 N/A N/A N/A 2.600±0.00 N/A N/A N/A N/A N/A
ENST00000420665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.087±7.38 N/A N/A
ENST00000483443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000132329 ENST00000254661 N/A 15.899±0.00 N/A 13.519±7.91 1.038±0.63 27.844±27.10 21.370±19.57 6.892±2.98 17.089±11.59 24.696±0.00 18.807±14.38 29.643±3.65 23.497±11.97 9.537±9.07
ENST00000403885 1.578±0.00 3.250±0.00 1.216±0.00 7.534±2.21 2.205±0.61 9.533±8.47 8.965±6.68 3.614±0.00 5.397±0.44 5.145±4.78 24.057±13.75 7.880±4.83 7.245±2.11 5.111±0.00
ENST00000404910 N/A N/A N/A N/A N/A 2.193±0.00 N/A N/A N/A N/A N/A 5.138±2.16 N/A N/A
ENST00000409726 2.053±0.00 4.600±0.00 N/A 12.064±0.00 N/A 31.565±0.00 N/A 1.874±0.00 N/A N/A N/A 7.716±0.00 N/A 5.706±5.23
ENSG00000177483 ENST00000316997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.406±0.51
ENST00000409864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.656±0.00
ENST00000444524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.245±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034353 ENSMUST00000097648 3.548±2.07 8.860±1.35 2.100±0.27 5.404±6.60 11.992±4.77 69.501±7.92 4.835±2.66 0.917±0.14 3.052±0.51 17.054±5.39 10.556±0.92 25.558±14.88 3.061±1.34 2.521±2.33
ENSMUST00000165855 N/A 2.685±0.43 N/A 0.288±0.00 N/A N/A N/A 0.429±0.00 0.829±0.00 N/A N/A 9.713±1.47 N/A N/A
ENSMUST00000188475 N/A 4.945±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000070732 ENSMUST00000094698 0.038±0.01 0.042±0.00 0.017±0.00 0.009±0.00 N/A 0.032±0.00 0.009±0.00 0.015±0.01 0.123±0.09 0.015±0.00 N/A 0.085±0.04 0.160±0.15 5.804±3.85
ENSMUST00000185229 N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A 0.066±0.01 0.238±0.00 N/A
ENSMUST00000188818 0.093±0.00 N/A 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.408±0.00 2.820±0.00 70.222±0.00
ENSMUST00000190965 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A 0.071±0.00 N/A N/A
ENSMUSG00000100018 ENSMUST00000191211 0.077±0.00 N/A 0.014±0.00 0.077±0.00 N/A N/A N/A N/A 0.089±0.03 N/A 0.084±0.00 0.177±0.13 0.043±0.02 0.350±0.14

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