C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5145
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095633 Gm5145-201 ENSMUSG00000071273 10090 + 17:20570362-20571198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000095633
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000095633 0.120±0.04 0.074±0.03 0.028±0.02 0.096±0.00 0.069±0.02 0.069±0.02 0.034±0.00 0.059±0.03 0.051±0.01 0.209±0.21 0.095±0.02 0.052±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0017069 IEA snRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243563 SNRPA-001 protein_coding Homo_sapiens 0 841
ENST00000596860 SNRPA-012 retained_intron Homo_sapiens 0 311
ENST00000597353 SNRPA-011 protein_coding Homo_sapiens 0 390
ENST00000598923 SNRPA-010 retained_intron Homo_sapiens 0 531
ENST00000599362 SNRPA-009 protein_coding Homo_sapiens 0 372
ENST00000600456 SNRPA-005 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000601253 SNRPA-008 protein_coding Homo_sapiens 0 324
ENST00000601393 SNRPA-006 protein_coding Homo_sapiens 0 603

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