C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 178, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000096053 Fam178a-201 ENSMUSG00000036097 10090 + 19:44931119-44983787 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096053
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096053 3.386±1.38 5.470±4.27 6.024±0.54 8.819±3.72 5.879±6.02 2.538±0.30 2.475±0.39 2.607±0.73 3.323±2.01 5.256±2.62 1.976±0.35 8.251±2.21 11.328±3.50 4.560±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082U CIL_00082U_0002 VISTA 19:44330970-44933041
CIL_00082V CIL_00082V_0002 VISTA 19:44333644-44934226
CIL_00093R CIL_00093R_0002 VISTA 19:44370805-44971431
CIL_00093O CIL_00093O_0002 VISTA 19:44374626-44975238
CIL_0008BC CIL_0008BC_0002 VISTA 19:44398597-45000718
CIL_0008BD CIL_0008BD_0002 VISTA 19:44496521-45098014
CIL_0007U1 CIL_0007U1_0002 VISTA 19:44501251-45102539
CIL_0003MX CIL_0003MX_0002 CGP 19:44756045-44983787
CIL_000940 CIL_000940_0002 VISTA 19:44925545-45526320
CIL_0000EY CIL_0000EY_0002 CGP 19:44931119-45003397

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003674 ND molecular_function
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238961 FAM178A-001 protein_coding Homo_sapiens 0 4305
ENST00000370269 FAM178A-002 protein_coding Homo_sapiens 0 4146
ENST00000370271 FAM178A-003 protein_coding Homo_sapiens 0 2246
ENST00000481654 FAM178A-004 processed_transcript Homo_sapiens 3e-35 152
ENST00000609386 FAM178A-005 protein_coding Homo_sapiens 0 440

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