C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UBX domain protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000096255 Ubxn1-201 ENSMUSG00000071655 10090 + 19:8871643-8875663 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096255
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096255 13.797±3.34 50.031±11.44 27.187±10.98 28.157±32.40 17.575±6.32 16.137±3.73 11.294±0.41 22.138±11.42 17.344±5.70 10.901±1.36 26.478±8.59 38.650±45.59 94.121±71.20 15.473±7.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0030425 IEA dendrite
GO:0031397 ISS negative regulation of protein ubiquitination
GO:0031593 IEA polyubiquitin binding
GO:0031625 IEA ubiquitin protein ligase binding
GO:0032435 ISS negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034098 IEA Cdc48p-Npl4p-Ufd1p AAA ATPase complex
GO:0043025 IEA neuronal cell body
GO:0043130 IEA ubiquitin binding
GO:0051117 IEA ATPase binding
GO:0071796 ISS K6-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294119 UBXN1-001 protein_coding Homo_sapiens 0 1038
ENST00000301935 UBXN1-002 protein_coding Homo_sapiens 0 1190
ENST00000436354 UBXN1-008 retained_intron Homo_sapiens 0 390
ENST00000524762 UBXN1-015 processed_transcript Homo_sapiens 0 652
ENST00000525004 UBXN1-016 processed_transcript Homo_sapiens 0 254
ENST00000525717 UBXN1-005 retained_intron Homo_sapiens 0 654
ENST00000526919 UBXN1-014 retained_intron Homo_sapiens 0 654
ENST00000527421 UBXN1-012 retained_intron Homo_sapiens 0 536
ENST00000528907 UBXN1-011 retained_intron Homo_sapiens 0 390
ENST00000529640 UBXN1-010 protein_coding Homo_sapiens 0 1118
ENST00000531056 UBXN1-013 retained_intron Homo_sapiens 0 329
ENST00000531625 UBXN1-007 retained_intron Homo_sapiens 0 211
ENST00000532904 UBXN1-003 retained_intron Homo_sapiens 0 536
ENST00000533000 UBXN1-017 protein_coding Homo_sapiens 0 270
ENST00000533476 UBXN1-004 retained_intron Homo_sapiens 0 536
ENST00000533908 UBXN1-009 retained_intron Homo_sapiens 0 584
ENST00000534176 UBXN1-006 protein_coding Homo_sapiens 0 1075
ENST00000616865 UBXN1-201 protein_coding Homo_sapiens 0 804

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