C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 37A (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098817 Vps37a-201 ENSMUSG00000031600 10090 + 8:40511783-40551134 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098817
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098817 4.043±1.68 16.876±10.53 6.761±0.01 7.205±2.22 7.081±4.82 6.054±1.70 2.635±0.54 3.862±1.24 4.410±1.68 5.150±1.21 8.488±0.86 11.029±6.34 5.809±1.37 6.173±2.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VB CIL_0001VB_0002 CGP 8:40423815-40515847
CIL_0001T6 CIL_0001T6_0002 CGP 8:40492540-40551134
CIL_00006T CIL_00006T_0003 CGP 8:40511783-40634797

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000813 ISS ESCRT I complex
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0015031 IEA protein transport
GO:0043162 ISS ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324849 VPS37A-001 protein_coding Homo_sapiens 0 1722
ENST00000425020 VPS37A-002 nonsense_mediated_decay Homo_sapiens 0 1053
ENST00000519381 VPS37A-007 nonsense_mediated_decay Homo_sapiens 6e-33 145
ENST00000520140 VPS37A-004 nonsense_mediated_decay Homo_sapiens 0 909
ENST00000520639 CTB-158E9.2-001 processed_pseudogene Homo_sapiens 0 1271
ENST00000521829 VPS37A-003 protein_coding Homo_sapiens 0 1273
ENST00000521976 VPS37A-008 protein_coding Homo_sapiens 0 699

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