C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thymopoietin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099355 Tmpo-204 ENSMUSG00000019961 10090 - 10:91147571-91171582 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartMuscleENSMUST00000099355
Transcript ID Colon Heart Muscle
ENSMUST00000099355 4.928±0.00 1.447±0.15 4.679±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090D CIL_00090D_0002 VISTA 10:90885612-91488565
CIL_0003XT CIL_0003XT_0002 CGP 10:91116574-91171582

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 ISO chromatin
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0005635 IDA nuclear envelope
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261210 TMPO-006 protein_coding Homo_sapiens 0 800
ENST00000266732 TMPO-001 protein_coding Homo_sapiens 0 691
ENST00000343315 TMPO-014 protein_coding Homo_sapiens 0 918
ENST00000393053 TMPO-005 protein_coding Homo_sapiens 0 813
ENST00000413126 TMPOP1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000423447 TMPOP1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000424642 TMPOP1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000454448 TMPOP1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000457073 TMPOP1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000457971 TMPOP1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000546828 TMPO-013 processed_transcript Homo_sapiens 0 466
ENST00000547214 TMPO-007 processed_transcript Homo_sapiens 0 359
ENST00000548223 TMPO-010 processed_transcript Homo_sapiens 0 616
ENST00000549938 TMPO-009 processed_transcript Homo_sapiens 0 359
ENST00000551987 TMPO-011 retained_intron Homo_sapiens 0 540
ENST00000552831 TMPO-008 retained_intron Homo_sapiens 0 477
ENST00000556029 TMPO-002 protein_coding Homo_sapiens 0 918
ENST00000556678 TMPO-015 protein_coding Homo_sapiens 0 907
ENST00000575258 TMPOP2-001 processed_pseudogene Homo_sapiens 0 505

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