C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuroepithelial cell transforming gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099946 Net1-202 ENSMUSG00000021215 10090 - 13:3882565-3893578 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099946
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099946 23.661±1.88 9.045±2.16 14.986±2.71 3.474±2.89 24.687±2.54 37.017±3.77 3.052±0.73 21.648±0.92 12.615±5.36 22.803±1.57 12.014±1.01 15.678±7.50 19.460±6.85 1.210±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HB CIL_0008HB_0002 VISTA 13:3426204-4027216
CIL_00097T CIL_00097T_0002 VISTA 13:3441069-4044545

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0017049 IDA GTP-Rho binding
GO:0032321 ISS positive regulation of Rho GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0043065 ISS positive regulation of apoptotic process
GO:0051451 IGI myoblast migration
GO:0070301 ISS cellular response to hydrogen peroxide
GO:0071479 ISS cellular response to ionizing radiation
GO:1900026 IDA positive regulation of substrate adhesion-dependent cell spreading

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355029 NET1-005 protein_coding Homo_sapiens 0 1631
ENST00000380359 NET1-006 protein_coding Homo_sapiens 0 1788
ENST00000449083 NET1-003 protein_coding Homo_sapiens 0 490
ENST00000484741 NET1-004 processed_transcript Homo_sapiens 0 603
ENST00000486354 NET1-001 processed_transcript Homo_sapiens 0 468

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