C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caspase recruitment domain family, member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100303 Card9-201 ENSMUSG00000026928 10090 - 2:26352176-26359747 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSMUST00000100303
Transcript ID Liver
ENSMUST00000100303 2.838±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034K CIL_00034K_0002 CGP 2:26348121-26360918
CIL_0002E9 CIL_0002E9_0003 CGP 2:26352176-26380653

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0009620 IMP response to fungus
GO:0032494 IMP response to peptidoglycan
GO:0032495 IMP response to muramyl dipeptide
GO:0032755 IMP positive regulation of interleukin-6 production
GO:0032760 IMP positive regulation of tumor necrosis factor production
GO:0032874 IMP positive regulation of stress-activated MAPK cascade
GO:0042493 IMP response to drug
GO:0042534 IMP regulation of tumor necrosis factor biosynthetic process
GO:0042803 IEA protein homodimerization activity
GO:0042981 IEA regulation of apoptotic process
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043330 IMP response to exogenous dsRNA
GO:0045076 IMP regulation of interleukin-2 biosynthetic process
GO:0045087 IEA innate immune response
GO:0045089 IMP positive regulation of innate immune response
GO:0045408 IMP regulation of interleukin-6 biosynthetic process
GO:0046330 IMP positive regulation of JNK cascade
GO:0050700 IEA CARD domain binding
GO:0050830 IMP defense response to Gram-positive bacterium
GO:0051607 IMP defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371732 CARD9-004 protein_coding Homo_sapiens 0 1633
ENST00000371734 CARD9-001 protein_coding Homo_sapiens 0 1487
ENST00000481053 CARD9-005 retained_intron Homo_sapiens 0 1293
ENST00000485975 CARD9-007 retained_intron Homo_sapiens 0 305
ENST00000489932 CARD9-002 nonsense_mediated_decay Homo_sapiens 0 1293
ENST00000556340 CARD9-008 retained_intron Homo_sapiens 0 795

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