C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mannose receptor, C type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100335 Mrc2-001 ENSMUSG00000020695 10090 + 11:105292646-105351139 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100335
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100335 21.058±12.51 7.274±0.18 12.893±0.90 3.843±2.51 13.275±4.73 6.002±0.34 4.684±0.22 9.934±0.84 0.525±0.31 35.522±0.73 1.072±0.65 21.181±8.55 2.824±1.15 0.283±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000563 CIL_000563_0003 CGP 11:105178807-105351139
CIL_000700 CIL_000700_0002 CGP 11:105292643-105456735

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0005515 IEA protein binding
GO:0005518 ISA collagen binding
GO:0005886 TAS plasma membrane
GO:0005925 IEA focal adhesion
GO:0006897 IEA endocytosis
GO:0009986 ISA cell surface
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 ISA carbohydrate binding
GO:0030574 IEA collagen catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303375 MRC2-001 protein_coding Homo_sapiens 0 5289
ENST00000446119 MRC2-004 protein_coding Homo_sapiens 0 905
ENST00000580916 MRC2-007 processed_transcript Homo_sapiens 7e-38 159
ENST00000583597 MRC2-003 retained_intron Homo_sapiens 0 2130
ENST00000584265 MRC2-002 retained_intron Homo_sapiens 0 2388
ENST00000584682 MRC2-006 nonsense_mediated_decay Homo_sapiens 0 608

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