C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mannose receptor, C type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303375 MRC2-001 ENSG00000011028 9606 + 17:62627401-62693597 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303375 4.034±0.00 2.149±0.00 0.661±0.00 0.617±0.15 8.785±6.89 3.775±1.88 2.780±1.38 3.728±3.23 3.435±2.95 18.051±13.21 1.898±0.00 23.003±18.48 11.035±5.45 9.194±6.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000563 CIL_000563_0002 CGP 17:62458658-62693597
CIL_000700 CIL_000700_0001 CGP 17:62627401-62808344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0005515 IPI protein binding
GO:0005518 IDA collagen binding
GO:0005925 IDA focal adhesion
GO:0006897 IEA endocytosis
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0030574 IDA collagen catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100335 Mrc2-001 protein_coding Mus_musculus 0 5289
ENSMUST00000021038 Mrc2-003 protein_coding Mus_musculus 0 3596
ENSMUST00000126931 Mrc2-002 processed_transcript Mus_musculus 0 577
ENSMUST00000142905 Mrc2-004 processed_transcript Mus_musculus 0 531
ENSMUST00000151135 Mrc2-005 retained_intron Mus_musculus 0 313

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