C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 3, subunit B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100507 Eif3b-201 ENSMUSG00000056076 10090 + 5:140419305-140443358 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100507
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100507 44.577±15.59 36.907±21.09 48.649±0.49 41.305±4.81 36.029±10.11 28.676±7.52 23.875±2.32 30.195±6.53 41.053±20.68 35.525±7.15 26.401±1.21 55.939±24.45 81.825±44.66 133.495±25.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZL CIL_0000ZL_0002 CGP 5:140340304-140443358
CIL_0007RS CIL_0007RS_0002 VISTA 5:140361312-140964153
CIL_00027M CIL_00027M_0003 CGP 5:140419305-140525724

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001731 IEA formation of translation preinitiation complex
GO:0003743 IDA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005852 IDA eukaryotic translation initiation factor 3 complex
GO:0006413 IDA translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0031369 IEA translation initiation factor binding
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0070062 IEA extracellular vesicular exosome
GO:0071541 IDA eukaryotic translation initiation factor 3 complex, eIF3m

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000155440 eif3ba-001 protein_coding Danio_rerio 0 1314
ENSDART00000083129 eif3ba-201 protein_coding Danio_rerio 0 1271
ENST00000360876 EIF3B-002 protein_coding Homo_sapiens 0 2534
ENST00000397011 EIF3B-001 protein_coding Homo_sapiens 0 2569
ENST00000413917 EIF3B-003 protein_coding Homo_sapiens 0 774
ENST00000431643 EIF3B-008 protein_coding Homo_sapiens 0 1024
ENST00000463229 EIF3B-009 retained_intron Homo_sapiens 0 538
ENST00000465670 EIF3B-007 retained_intron Homo_sapiens 0 261
ENST00000466199 EIF3B-012 retained_intron Homo_sapiens 0 521
ENST00000468250 EIF3B-011 retained_intron Homo_sapiens 1.99965e-42 176
ENST00000468611 EIF3B-006 retained_intron Homo_sapiens 0 560
ENST00000475415 EIF3B-005 retained_intron Homo_sapiens 0 429
ENST00000494658 EIF3B-013 retained_intron Homo_sapiens 0 372

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