C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger CCCH type containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100538 Zc3h3-201 ENSMUSG00000075600 10090 - 15:75754432-75841915 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100538
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100538 1.863±0.81 3.350±0.50 4.915±0.92 5.270±3.59 2.415±1.01 5.341±0.72 0.753±0.38 1.696±0.29 1.399±0.89 2.843±1.14 0.610±0.18 3.047±1.56 1.467±0.88 7.376±4.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0002 VISTA 15:75534812-76135772
CIL_0000X0 CIL_0000X0_0003 CGP 15:75746843-75841915
CIL_0001NJ CIL_0001NJ_0002 CGP 15:75754432-75867404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISS nucleus
GO:0005847 IDA mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 ISS mRNA polyadenylation
GO:0010793 ISS regulation of mRNA export from nucleus
GO:0016973 ISS poly(A)+ mRNA export from nucleus
GO:0031124 IDA mRNA 3'-end processing
GO:0032927 IGI positive regulation of activin receptor signaling pathway
GO:0046332 IPI SMAD binding
GO:0046872 IEA metal ion binding
GO:0070412 IDA R-SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262577 ZC3H3-001 protein_coding Homo_sapiens 0 1810

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