C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: shroom family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101141 Shroom2-201 ENSMUSG00000045180 10090 - X:152609509-152769461 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101141
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101141 0.537±0.29 0.889±0.33 0.336±0.03 0.203±0.05 1.012±0.35 0.368±0.05 1.524±0.36 0.652±0.53 1.187±0.70 0.141±0.00 1.680±0.91 0.939±0.59 0.170±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TC CIL_0002TC_0002 CGP X:152563334-152769465

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005911 IDA cell-cell junction
GO:0005938 IDA cell cortex
GO:0019904 IPI protein domain specific binding
GO:0030835 IDA negative regulation of actin filament depolymerization
GO:0030864 IEA cortical actin cytoskeleton
GO:0031941 IDA filamentous actin
GO:0032401 IEA establishment of melanosome localization
GO:0043025 IDA neuronal cell body
GO:0043296 IDA apical junction complex
GO:0045176 IEA apical protein localization
GO:0045217 IDA cell-cell junction maintenance
GO:0051015 IEA actin filament binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380913 SHROOM2-001 protein_coding Homo_sapiens 0 1123
ENST00000418909 SHROOM2-201 protein_coding Homo_sapiens 0 1110
ENST00000452575 SHROOM2-002 protein_coding Homo_sapiens 0 867

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