C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: yrdC N(6)-threonylcarbamoyltransferase domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373044 YRDC-001 ENSG00000196449 9606 - 1:37802944-37808185 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373044
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373044 3.298±0.00 4.458±0.00 0.077±0.00 3.470±0.69 2.730±0.41 1.540±0.73 1.314±0.98 4.035±2.44 3.990±2.67 3.950±2.95 2.016±0.00 3.514±1.46 8.859±5.08 10.978±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095Y CIL_00095Y_0001 VISTA 1:37729017-38330016
CIL_0007UI CIL_0007UI_0001 VISTA 1:37794522-38395934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 IEA double-stranded RNA binding
GO:0005515 IEA protein binding
GO:0005739 IEA mitochondrion
GO:0016020 IEA membrane
GO:0051051 IDA negative regulation of transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102628 Yrdc-001 protein_coding Mus_musculus 0 909
ENSMUST00000144851 Yrdc-002 protein_coding Mus_musculus 0 429
ENSMUST00000185036 1110065P20Rik-004 protein_coding Mus_musculus 0 422
ENSMUST00000173434 Yrdc-003 retained_intron Mus_musculus 0 379

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