C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family B (MDR/TAP), member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102710 Abcb11-001 ENSMUSG00000027048 10090 - 2:69238282-69342614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000102710
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000102710 0.034±0.03 0.063±0.00 0.012±0.00 0.201±0.18 0.037±0.00 0.025±0.01 0.008±0.00 48.052±39.70 0.025±0.01 0.171±0.08 0.332±0.30 0.518±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HC CIL_0008HC_0002 VISTA 2:69119794-69721610
CIL_0006HX CIL_0006HX_0002 CGP 2:69211073-69342616
CIL_0006HZ CIL_0006HZ_0002 CGP 2:69238282-69404533

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0015126 IBA canalicular bile acid transmembrane transporter activity
GO:0015722 IBA canalicular bile acid transport
GO:0016020 IDA membrane
GO:0016021 IBA integral component of membrane
GO:0042626 IBA ATPase activity, coupled to transmembrane movement of substances
GO:0045177 IDA apical part of cell
GO:0046581 IDA intercellular canaliculus
GO:0055085 IBA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263817 ABCB11-001 protein_coding Homo_sapiens 0 3674
ENST00000439188 ABCB11-003 nonsense_mediated_decay Homo_sapiens 0 1384
ENST00000478354 ABCB11-004 retained_intron Homo_sapiens 0 230
ENST00000611248 ABCB11-003 processed_transcript Homo_sapiens 0 617
ENST00000618180 ABCB11-001 protein_coding Homo_sapiens 0 1330

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