C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTPase activating protein and VPS9 domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102800 Gapvd1-001 ENSMUSG00000026867 10090 - 2:34676184-34755232 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000102800
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000102800 1.307±0.54 1.282±0.00 1.847±0.14 4.172±1.06 1.128±0.12 2.946±0.82 1.704±0.36 2.717±1.85 2.194±0.71 4.225±3.37 4.335±1.64 1.344±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LX CIL_0008LX_0002 VISTA 2:34155217-34756803
CIL_00080V CIL_00080V_0002 VISTA 2:34162107-34763282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 IMP guanyl-nucleotide exchange factor activity
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0006897 IEA endocytosis
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0032794 IMP GTPase activating protein binding
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction
GO:0051223 IMP regulation of protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265956 GAPVD1-201 protein_coding Homo_sapiens 0 1812
ENST00000297933 GAPVD1-015 protein_coding Homo_sapiens 0 3648
ENST00000312123 GAPVD1-003 protein_coding Homo_sapiens 0 5662
ENST00000394083 GAPVD1-016 protein_coding Homo_sapiens 0 3855
ENST00000394084 GAPVD1-005 protein_coding Homo_sapiens 0 1886
ENST00000394104 GAPVD1-202 protein_coding Homo_sapiens 0 2228
ENST00000394105 GAPVD1-012 protein_coding Homo_sapiens 0 2717
ENST00000431329 GAPVD1-009 protein_coding Homo_sapiens 0 1666
ENST00000436712 GAPVD1-011 protein_coding Homo_sapiens 0 1949
ENST00000461379 GAPVD1-017 protein_coding Homo_sapiens 0 477
ENST00000467750 GAPVD1-001 protein_coding Homo_sapiens 0 2228
ENST00000470056 GAPVD1-002 protein_coding Homo_sapiens 0 2279
ENST00000474637 GAPVD1-006 retained_intron Homo_sapiens 0 1879
ENST00000479511 GAPVD1-010 retained_intron Homo_sapiens 0 344
ENST00000495955 GAPVD1-014 protein_coding Homo_sapiens 0 2228
ENST00000497580 GAPVD1-013 nonsense_mediated_decay Homo_sapiens 0 2300

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