C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulon 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102842 Rtn4-006 ENSMUSG00000020458 10090 + 11:29692947-29742916 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000102842
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000102842 24.315±7.90 93.243±19.52 51.217±14.77 17.001±1.64 11.761±3.39 4.155±1.39 10.713±4.08 18.378±6.90 28.465±7.52 24.443±13.91 59.111±19.03 4.258±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0007399 IDA nervous system development
GO:0016021 IEA integral component of membrane
GO:0042995 IDA cell projection
GO:0043025 IDA neuronal cell body
GO:0060317 IMP cardiac epithelial to mesenchymal transition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317610 RTN4-002 protein_coding Homo_sapiens 0 1216
ENST00000337526 RTN4-001 protein_coding Homo_sapiens 0 1219
ENST00000357376 RTN4-014 protein_coding Homo_sapiens 0 1219
ENST00000357732 RTN4-007 protein_coding Homo_sapiens 0 1397
ENST00000394609 RTN4-008 protein_coding Homo_sapiens 0 1216
ENST00000394611 RTN4-013 protein_coding Homo_sapiens 0 1219
ENST00000402434 RTN4-201 protein_coding Homo_sapiens 0 907
ENST00000404909 RTN4-006 protein_coding Homo_sapiens 0 1219
ENST00000405240 RTN4-003 protein_coding Homo_sapiens 0 1219
ENST00000427710 RTN4-004 protein_coding Homo_sapiens 4e-20 102
ENST00000438462 RTN4-012 protein_coding Homo_sapiens 0 752
ENST00000485749 RTN4-011 processed_transcript Homo_sapiens 0 296
ENST00000486085 RTN4-009 processed_transcript Homo_sapiens 0 399
ENST00000491592 RTN4-010 processed_transcript Homo_sapiens 0 233

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