C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: immature colon carcinoma transcript 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103036 Ict1-002 ENSMUSG00000018858 10090 + 11:115403757-115410919 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103036
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103036 17.507±1.12 24.899±2.50 21.422±0.09 11.487±2.15 13.184±3.27 17.477±1.42 24.624±3.02 17.052±6.44 11.594±2.13 18.104±1.42 18.351±3.50 21.281±7.54 3.830±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_00008O CIL_00008O_0002 CGP 11:115381916-115412674

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004045 ISS aminoacyl-tRNA hydrolase activity
GO:0005739 ISS mitochondrion
GO:0005762 ISS mitochondrial large ribosomal subunit
GO:0016150 ISS translation release factor activity, codon nonspecific
GO:0070126 ISS mitochondrial translational termination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301585 ICT1-001 protein_coding Homo_sapiens 0 409
ENST00000580800 ICT1-002 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000584208 ICT1-004 protein_coding Homo_sapiens 0 270

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