C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: immature colon carcinoma transcript 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301585 ICT1-001 ENSG00000167862 9606 + 17:75012674-75021261 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301585 7.925±0.00 17.219±0.00 3.631±0.00 5.540±1.81 6.776±3.92 7.154±2.18 9.284±5.49 11.775±6.33 11.053±8.00 3.935±1.06 13.502±6.79 19.517±14.42 23.237±8.37 14.173±3.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008O CIL_00008O_0001 CGP 17:74987632-75021261

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003747 IEA translation release factor activity
GO:0004045 IDA aminoacyl-tRNA hydrolase activity
GO:0005739 IDA mitochondrion
GO:0005762 IDA mitochondrial large ribosomal subunit
GO:0006415 IEA translational termination
GO:0016150 IDA translation release factor activity, codon nonspecific
GO:0070126 IDA mitochondrial translational termination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153983 Ict1-001 protein_coding Mus_musculus 0 549
ENSMUST00000103036 Ict1-002 protein_coding Mus_musculus 0 409
ENSMUST00000021079 Ict1-007 processed_transcript Mus_musculus 0 381
ENSMUST00000135619 Ict1-009 retained_intron Mus_musculus 0 309
ENSMUST00000122946 Ict1-005 nonsense_mediated_decay Mus_musculus 1.96182e-44 183

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