C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: immature colon carcinoma transcript 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018858 Ict1 10090 + 11:115403752-115412674 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021079 Ict1-007 115403822-115410724 processed_transcript
  ENSMUST00000103036 Ict1-002 115403757-115410919 protein_coding
  ENSMUST00000106539 Ict1-003 115403754-115412662 protein_coding
  ENSMUST00000122946 Ict1-005 115403771-115410261 nonsense_mediated_decay
  ENSMUST00000128632 Ict1-004 115403767-115410053 retained_intron
  ENSMUST00000133192 Ict1-006 115403777-115410759 processed_transcript
  ENSMUST00000134386 Ict1-010 115410160-115410908 retained_intron
  ENSMUST00000135619 Ict1-009 115403782-115410251 retained_intron
  ENSMUST00000153983 Ict1-001 115403752-115412674 protein_coding
  ENSMUST00000155134 Ict1-008 115409861-115410719 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103036ENSMUST00000122946ENSMUST00000128632ENSMUST00000134386ENSMUST00000135619ENSMUST00000153983ENSMUST00000155134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103036 17.507±1.12 N/A 24.899±2.50 21.422±0.09 11.487±2.15 13.184±3.27 17.477±1.42 24.624±3.02 17.052±6.44 11.594±2.13 18.104±1.42 18.351±3.50 21.281±7.54 3.830±0.61
ENSMUST00000122946 N/A N/A N/A N/A N/A N/A N/A N/A 59.897±0.00 N/A N/A N/A N/A N/A
ENSMUST00000128632 12.869±0.00 N/A N/A 9.646±0.00 22.872±12.30 24.496±0.00 8.377±0.15 16.158±6.25 13.876±8.40 18.540±6.51 N/A 25.568±16.06 N/A 1.168±0.00
ENSMUST00000134386 15.731±0.00 44.424±4.10 N/A 161.583±0.00 14.579±2.97 16.439±0.00 11.819±0.50 24.808±5.90 13.458±1.58 22.679±3.11 N/A 69.544±68.29 79.547±71.67 22.307±0.00
ENSMUST00000135619 29.304±5.20 N/A 17.263±0.00 21.656±0.00 26.069±7.98 13.815±0.00 24.421±6.81 31.343±9.21 13.747±3.04 15.904±0.97 10.749±1.43 22.522±0.00 18.635±0.00 5.428±1.76
ENSMUST00000153983 N/A N/A N/A 2.932±0.32 3.892±0.00 N/A 1.104±0.00 N/A 1.021±0.00 N/A N/A N/A N/A 0.273±0.00
ENSMUST00000155134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.156±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_00008O CIL_00008O_0002 CGP 11:115381916-115412674

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004045 ISS aminoacyl-tRNA hydrolase activity
GO:0005739 ISS mitochondrion
GO:0005762 ISS mitochondrial large ribosomal subunit
GO:0016150 ISS translation release factor activity, codon nonspecific
GO:0070126 ISS mitochondrial translational termination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078835 ICT1 immature colon carcinoma transcript 1 protein_coding Danio_rerio
ENSG00000167862 ICT1 immature colon carcinoma transcript 1 protein_coding Homo_sapiens

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