C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin associated protein-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103109 Cntnap1-001 ENSMUSG00000017167 10090 + 11:101176041-101190724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103109
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103109 3.189±0.52 5.269±0.34 3.247±1.14 18.932±24.95 2.646±0.18 4.415±0.36 1.249±0.04 1.395±0.13 0.330±0.17 1.268±0.27 0.571±0.00 6.087±1.31 0.385±0.21 0.139±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005H5 CIL_0005H5_0002 CGP 11:101155907-101171351

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002175 IMP protein localization to paranode region of axon
GO:0005886 TAS plasma membrane
GO:0007010 IMP cytoskeleton organization
GO:0007155 IEA cell adhesion
GO:0008076 IDA voltage-gated potassium channel complex
GO:0008088 IMP axon cargo transport
GO:0016021 ISS integral component of membrane
GO:0017124 ISS SH3 domain binding
GO:0019227 IMP neuronal action potential propagation
GO:0030424 IEA axon
GO:0030913 IMP paranodal junction assembly
GO:0031175 IGI neuron projection development
GO:0033270 IDA paranode region of axon
GO:0048812 IMP neuron projection morphogenesis
GO:0050884 IMP neuromuscular process controlling posture
GO:0050885 IMP neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264638 CNTNAP1-001 protein_coding Homo_sapiens 0 5461
ENST00000585534 CNTNAP1-003 retained_intron Homo_sapiens 0 412
ENST00000586801 CNTNAP1-004 retained_intron Homo_sapiens 0 457
ENST00000591662 CNTNAP1-002 nonsense_mediated_decay Homo_sapiens 0 4979

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