C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choroideremia-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000104984 Chml-001 ENSMUSG00000078185 10090 - 1:175686488-175688353 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000104984
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000104984 1.484±0.17 0.405±0.16 2.654±0.00 1.050±0.16 1.010±0.41 0.633±0.13 0.465±0.10 0.232±0.21 0.970±0.00 0.159±0.07 1.412±0.62 2.149±1.08 2.126±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000I7 CIL_0000I7_0002 CGP 1:175620381-175692776
CIL_0003AP CIL_0003AP_0002 CGP 1:175662421-175692776
CIL_0003AJ CIL_0003AJ_0002 CGP 1:175686488-175815734

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004663 IEA Rab geranylgeranyltransferase activity
GO:0005096 IEA GTPase activator activity
GO:0005968 ISS Rab-protein geranylgeranyltransferase complex
GO:0006886 IEA intracellular protein transport
GO:0017137 ISS Rab GTPase binding
GO:0018344 ISS protein geranylgeranylation
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339077 KLHL7-002 protein_coding Homo_sapiens 0.0001 55
ENST00000366553 CHML-001 protein_coding Homo_sapiens 0 1646

Loading