C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Parkinson disease (autosomal recessive, early onset) 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105676 Park7-004 ENSMUSG00000028964 10090 - 4:150897236-150908413 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000105676
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000105676 27.311±4.86 28.591±3.38 27.091±0.00 41.725±0.00 20.736±2.43 63.410±0.00 47.659±13.27 23.694±0.00 65.700±21.81 22.757±7.40 17.496±2.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0002 VISTA 4:150524120-151125978

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001963 IMP synaptic transmission, dopaminergic
GO:0003723 TAS RNA binding
GO:0005739 IDA mitochondrion
GO:0008283 TAS cell proliferation
GO:0008344 IMP adult locomotory behavior
GO:0034614 IMP cellular response to reactive oxygen species
GO:0042542 IDA response to hydrogen peroxide
GO:0042743 IMP hydrogen peroxide metabolic process
GO:0051583 IMP dopamine uptake involved in synaptic transmission
GO:0051899 IMP membrane depolarization
GO:0051920 IMP peroxiredoxin activity
GO:0055114 IMP oxidation-reduction process
GO:0060081 IMP membrane hyperpolarization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338639 PARK7-002 protein_coding Homo_sapiens 0 547
ENST00000377488 PARK7-006 protein_coding Homo_sapiens 0 547
ENST00000377491 PARK7-005 protein_coding Homo_sapiens 0 547
ENST00000377493 PARK7-003 protein_coding Homo_sapiens 0 224
ENST00000460192 PARK7-007 retained_intron Homo_sapiens 0 224
ENST00000465354 PARK7-008 retained_intron Homo_sapiens 0 372
ENST00000493373 PARK7-004 protein_coding Homo_sapiens 0 547
ENST00000493678 PARK7-001 protein_coding Homo_sapiens 0 547
ENST00000497113 PARK7-009 processed_transcript Homo_sapiens 0 374

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