C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cysteinyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105909 Cars-002 ENSMUSG00000010755 10090 - 7:143557707-143600056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105909 6.312±0.75 4.103±0.48 7.843±0.55 10.463±2.60 4.229±0.99 5.896±0.91 2.399±0.45 3.226±0.52 11.386±5.61 4.539±1.17 10.120±0.40 8.190±2.81 17.200±5.18 6.327±5.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006OC CIL_0006OC_0003 CGP 7:143513579-143600090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 ISS tRNA binding
GO:0004817 ISS cysteine-tRNA ligase activity
GO:0005737 ISS cytoplasm
GO:0005829 IBA cytosol
GO:0006423 ISS cysteinyl-tRNA aminoacylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278224 CARS-002 protein_coding Homo_sapiens 0 2361
ENST00000380525 CARS-004 protein_coding Homo_sapiens 0 2344
ENST00000397111 CARS-001 protein_coding Homo_sapiens 0 2398
ENST00000465240 CARS-010 processed_transcript Homo_sapiens 0 342
ENST00000526890 CARS-014 retained_intron Homo_sapiens 0 828
ENST00000529772 CARS-016 protein_coding Homo_sapiens 0 2307
ENST00000531387 CARS-003 nonsense_mediated_decay Homo_sapiens 0 2261
ENST00000603171 CARSP1-001 processed_pseudogene Homo_sapiens 0 307
ENST00000612826 AC001228.2-201 protein_coding Homo_sapiens 0 2350

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