C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cysteinyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397111 CARS-001 ENSG00000110619 9606 - 11:3000922-3057613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397111
Transcript ID Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397111 2.310±0.00 7.267±0.00 3.450±0.00 2.567±0.29 3.873±0.00 2.668±0.00 6.683±6.16 9.346±5.62 6.715±1.71 7.633±1.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006OC CIL_0006OC_0002 CGP 11:2944431-3057613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IDA tRNA binding
GO:0000166 IEA nucleotide binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004817 IDA:IEA cysteine-tRNA ligase activity
GO:0005515 IPI protein binding
GO:0005524 IDA:IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005829 IBA cytosol
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006423 IDA:IEA cysteinyl-tRNA aminoacylation
GO:0010467 TAS gene expression
GO:0042803 IDA protein homodimerization activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105909 Cars-002 protein_coding Mus_musculus 0 2398
ENSMUST00000010899 Cars-001 protein_coding Mus_musculus 0 2344
ENSMUST00000146904 Cars-006 retained_intron Mus_musculus 0 407
ENSMUST00000134753 Cars-007 retained_intron Mus_musculus 0 387
ENSMUST00000135032 Cars-008 processed_transcript Mus_musculus 0 292

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