C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GDP dissociation inhibitor (GDI) alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106197 Arhgdia-001 ENSMUSG00000025132 10090 - 11:120578104-120581624 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106197
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106197 219.802±44.03 276.675±6.98 184.868±12.80 156.177±74.68 283.416±91.82 307.329±40.84 67.049±14.20 202.979±19.24 104.892±45.87 361.183±43.95 32.591±2.06 257.828±101.37 234.414±94.12 22.918±10.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004M1 CIL_0004M1_0002 CGP 11:120560298-120581624
CIL_0004M2 CIL_0004M2_0002 CGP 11:120578104-120598365

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001772 IDA immunological synapse
GO:0005094 IDA Rho GDP-dissociation inhibitor activity
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0007266 IDA Rho protein signal transduction
GO:0032880 IDA regulation of protein localization
GO:0043547 IEA positive regulation of GTPase activity
GO:0050790 IDA regulation of catalytic activity
GO:0071526 IMP semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269321 ARHGDIA-001 protein_coding Homo_sapiens 0 869
ENST00000400721 ARHGDIA-002 protein_coding Homo_sapiens 0 534
ENST00000541078 ARHGDIA-012 protein_coding Homo_sapiens 0 785
ENST00000578351 ARHGDIA-004 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000579121 ARHGDIA-013 protein_coding Homo_sapiens 0 597
ENST00000580033 ARHGDIA-011 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000580685 ARHGDIA-015 protein_coding Homo_sapiens 0 785
ENST00000581876 ARHGDIA-016 protein_coding Homo_sapiens 0 302
ENST00000582309 ARHGDIA-014 retained_intron Homo_sapiens 0 309
ENST00000582984 ARHGDIA-007 retained_intron Homo_sapiens 0 460
ENST00000583111 ARHGDIA-010 retained_intron Homo_sapiens 0 416
ENST00000583499 ARHGDIA-008 retained_intron Homo_sapiens 0 230
ENST00000583791 ARHGDIA-017 retained_intron Homo_sapiens 6e-26 121
ENST00000583868 ARHGDIA-006 protein_coding Homo_sapiens 0 532
ENST00000584397 ARHGDIA-005 retained_intron Homo_sapiens 0 357
ENST00000584461 ARHGDIA-009 protein_coding Homo_sapiens 0 599

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