C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rabaptin, RAB GTPase binding effector protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106407 Rabep2-001 ENSMUSG00000030727 10090 + 7:126429066-126445901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000106407
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000106407 5.880±0.69 9.209±2.38 10.224±2.47 6.170±0.76 6.278±0.89 8.359±1.06 2.162±0.62 6.254±0.63 2.937±0.60 8.445±0.20 13.703±4.18 5.483±1.77 4.432±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000557 CIL_000557_0002 CGP 7:126428759-126463108

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005768 IEA endosome
GO:0006897 IEA endocytosis
GO:0008083 IEA growth factor activity
GO:0015031 IEA protein transport
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357573 RABEP2-006 protein_coding Homo_sapiens 0 785
ENST00000358201 RABEP2-001 protein_coding Homo_sapiens 0 1578
ENST00000544477 RABEP2-002 protein_coding Homo_sapiens 0 1352
ENST00000561803 RABEP2-016 processed_transcript Homo_sapiens 0 411
ENST00000562475 RABEP2-011 processed_transcript Homo_sapiens 0 411
ENST00000562590 RABEP2-005 retained_intron Homo_sapiens 0 1031
ENST00000563577 RABEP2-012 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000564473 RABEP2-010 processed_transcript Homo_sapiens 0 411
ENST00000564579 RABEP2-013 retained_intron Homo_sapiens 0 411
ENST00000567483 RABEP2-007 protein_coding Homo_sapiens 0 767
ENST00000568703 RABEP2-009 protein_coding Homo_sapiens 0 785
ENST00000570030 RABEP2-014 retained_intron Homo_sapiens 0 411

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