C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000557_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061213-ENSDARG00000020574 CGP 7955 3:26863439-26953764
GeneTranscriptPositionBiotype
ENSDARG00000020574 (atp2a1)
ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 		ENSDART00000043932 (atp2a1-001) 26878044-26890325 protein_coding
ENSDART00000129561 (atp2a1-002) 26878041-26890073 protein_coding
ENSDART00000134647 (atp2a1-006) 26887632-26953764 protein_coding
ENSDART00000139579 (atp2a1-004) 26883547-26890342 processed_transcript
ENSDART00000146267 (atp2a1-005) 26887632-26890342 protein_coding
ENSDART00000146979 (atp2a1-007) 26889988-26899605 protein_coding
ENSDART00000148365 (atp2a1-003) 26887674-26890342 retained_intron
ENSDARG00000021924 (hsp70.3)
heat shock cognate 70-kd protein, tandem duplicate 3 		ENSDART00000010477 (hsp70.3-001) 26908016-26911371 protein_coding
ENSDARG00000029688 (mcm5)
MCM5 minichromosome maintenance deficient 5 (S. cerevisiae) 		ENSDART00000045767 (mcm5-201) 26912773-26922321 protein_coding
ENSDART00000109863 (mcm5-202) 26920154-26922329 protein_coding
ENSDART00000124762 (mcm5-001) 26919548-26922322 protein_coding
ENSDARG00000061213 (rabep2)
rabaptin, RAB GTPase binding effector protein 2 		ENSDART00000087064 (rabep2-201) 26863549-26878028 protein_coding
ENSDART00000113890 (rabep2-001) 26863439-26878034 protein_coding
ENSDARG00000079699 ()
forkhead box D2 		ENSDART00000113780 () 26925785-26927074 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000557_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030727-ENSMUSG00000030730 CGP 10090 7:126428759-126463108
GeneTranscriptPositionBiotype
ENSMUSG00000030727 (Rabep2)
rabaptin, RAB GTPase binding effector protein 2 		ENSMUST00000106405 (Rabep2-003) 126429440-126445901 protein_coding
ENSMUST00000106407 (Rabep2-001) 126429066-126445901 protein_coding
ENSMUST00000127154 (Rabep2-007) 126438176-126438739 retained_intron
ENSMUST00000133300 (Rabep2-009) 126444800-126449245 processed_transcript
ENSMUST00000141764 (Rabep2-006) 126429099-126436133 retained_intron
ENSMUST00000148536 (Rabep2-008) 126440293-126444684 processed_transcript
ENSMUST00000150530 (Rabep2-004) 126429382-126438416 nonsense_mediated_decay
ENSMUST00000150933 (Rabep2-005) 126429428-126438407 nonsense_mediated_decay
ENSMUST00000151304 (Rabep2-002) 126428759-126445901 retained_intron
ENSMUSG00000030730 (Atp2a1)
ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 		ENSMUST00000032974 (Atp2a1-001) 126445858-126463108 protein_coding
ENSMUST00000126363 (Atp2a1-002) 126462494-126463108 processed_transcript
ENSMUST00000146973 (Atp2a1-003) 126445860-126447645 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000557_0001ENSDARG00000020574ENSDART00000043932ENSDART00000129561ENSDART00000134647ENSDART00000139579ENSDART00000146267ENSDART00000146979ENSDART00000148365ENSDARG00000021924ENSDART00000010477ENSDARG00000029688ENSDART00000045767ENSDART00000109863ENSDART00000124762ENSDARG00000061213ENSDART00000087064ENSDART00000113890ENSDARG00000079699ENSDART00000113780CIL_000557_0002ENSMUSG00000030727ENSMUST00000106405ENSMUST00000106407ENSMUST00000127154ENSMUST00000133300ENSMUST00000141764ENSMUST00000148536ENSMUST00000150530ENSMUST00000150933ENSMUST00000151304ENSMUSG00000030730ENSMUST00000032974ENSMUST00000126363ENSMUST00000146973
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000557_0001ENSDARG00000020574ENSDART00000043932ENSDART00000129561ENSDART00000134647ENSDARG00000021924ENSDART00000010477ENSDARG00000029688ENSDART00000045767ENSDART00000109863ENSDART00000124762ENSDARG00000061213ENSDART00000087064ENSDART00000113890ENSDARG00000079699ENSDART00000113780CIL_000557_0002ENSMUSG00000030727ENSMUST00000106405ENSMUST00000106407ENSMUST00000148536ENSMUST00000151304ENSMUSG00000030730ENSMUST00000032974ENSMUST00000146973
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000020574 ENSDART00000043932 N/A N/A N/A 0.630±0.53 N/A N/A 1.338±0.41 39.052±0.00 N/A N/A 81.550±0.00 N/A N/A N/A
ENSDART00000129561 N/A N/A N/A 0.388±0.17 N/A N/A 0.721±0.50 15.374±2.27 0.063±0.00 N/A 26.809±0.00 N/A N/A N/A
ENSDART00000134647 N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A
ENSDART00000139579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000021924 ENSDART00000010477 N/A N/A N/A 0.394±0.44 N/A N/A 0.514±0.54 0.024±0.00 1.898±0.00 N/A 2.907±0.00 N/A N/A N/A
ENSDARG00000029688 ENSDART00000045767 N/A N/A N/A 0.377±0.31 N/A N/A 0.571±0.00 2.423±1.69 0.920±0.00 N/A 3.258±0.00 N/A N/A N/A
ENSDART00000109863 N/A N/A N/A N/A N/A N/A N/A 6.801±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000124762 N/A N/A N/A N/A N/A N/A 0.259±0.00 0.492±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000061213 ENSDART00000087064 N/A N/A N/A 9.606±1.04 N/A N/A 5.837±0.64 0.925±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000113890 N/A N/A N/A 10.077±3.18 N/A N/A 12.359±2.91 5.521±2.17 N/A N/A 4.758±0.00 N/A N/A N/A
ENSDARG00000079699 ENSDART00000113780 N/A N/A N/A 0.238±0.01 N/A N/A 0.276±0.07 3.809±4.36 N/A N/A 0.528±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030727 ENSMUST00000106405 N/A 5.628±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.366±2.56 N/A 1.200±0.00
ENSMUST00000106407 5.880±0.69 9.209±2.38 10.224±2.47 6.170±0.76 6.278±0.89 8.359±1.06 2.162±0.62 6.254±0.63 2.937±0.60 8.445±0.20 N/A 13.703±4.18 5.483±1.77 4.432±0.87
ENSMUST00000127154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133300 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148536 N/A N/A N/A 6.168±0.00 N/A N/A N/A N/A N/A N/A N/A 40.931±0.00 6.747±1.41 11.553±0.00
ENSMUST00000150530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151304 3.922±0.39 16.178±3.08 7.188±1.52 1.827±0.68 10.331±0.23 5.682±0.34 0.929±0.32 4.149±0.78 1.576±0.85 5.323±0.11 N/A 14.237±3.35 0.912±0.30 3.214±0.57
ENSMUSG00000030730 ENSMUST00000032974 N/A N/A N/A N/A 1102.983±258.54 N/A 1.086±0.36 38.458±1.00 0.797±0.00 21.915±19.61 7450.746±352.77 N/A 0.681±0.00 N/A
ENSMUST00000126363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146973 N/A N/A N/A N/A 995.053±428.57 N/A N/A N/A N/A 72.767±6.30 N/A N/A N/A N/A

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