C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rabaptin, RAB GTPase binding effector protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030727 Rabep2 10090 + 7:126428759-126449245 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000106405 Rabep2-003 126429440-126445901 protein_coding
  ENSMUST00000106407 Rabep2-001 126429066-126445901 protein_coding
  ENSMUST00000127154 Rabep2-007 126438176-126438739 retained_intron
  ENSMUST00000133300 Rabep2-009 126444800-126449245 processed_transcript
  ENSMUST00000141764 Rabep2-006 126429099-126436133 retained_intron
  ENSMUST00000148536 Rabep2-008 126440293-126444684 processed_transcript
  ENSMUST00000150530 Rabep2-004 126429382-126438416 nonsense_mediated_decay
  ENSMUST00000150933 Rabep2-005 126429428-126438407 nonsense_mediated_decay
  ENSMUST00000151304 Rabep2-002 126428759-126445901 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000106405ENSMUST00000106407ENSMUST00000148536ENSMUST00000151304
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000106405 N/A 5.628±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 7.366±2.56 N/A 1.200±0.00
ENSMUST00000106407 5.880±0.69 9.209±2.38 10.224±2.47 6.170±0.76 6.278±0.89 8.359±1.06 2.162±0.62 6.254±0.63 2.937±0.60 8.445±0.20 13.703±4.18 5.483±1.77 4.432±0.87
ENSMUST00000148536 N/A N/A N/A 6.168±0.00 N/A N/A N/A N/A N/A N/A 40.931±0.00 6.747±1.41 11.553±0.00
ENSMUST00000151304 3.922±0.39 16.178±3.08 7.188±1.52 1.827±0.68 10.331±0.23 5.682±0.34 0.929±0.32 4.149±0.78 1.576±0.85 5.323±0.11 14.237±3.35 0.912±0.30 3.214±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000557 CIL_000557_0002 CGP 7:126428759-126463108

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005768 IEA endosome
GO:0006897 IEA endocytosis
GO:0008083 IEA growth factor activity
GO:0015031 IEA protein transport
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061213 rabep2 rabaptin, RAB GTPase binding effector protein 2 protein_coding Danio_rerio
ENSG00000177548 RABEP2 rabaptin, RAB GTPase binding effector protein 2 protein_coding Homo_sapiens

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