C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106433 Tmem53-003 ENSMUSG00000048772 10090 + 4:117252340-117268580 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryENSMUST00000106433
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000106433 3.736±0.86 42.780±12.99 18.686±3.36 5.429±2.05 7.188±1.08 18.440±5.15 3.479±1.16 12.753±3.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314
CIL_0001PQ CIL_0001PQ_0002 CGP 4:117251951-117497052

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372235 TMEM53-008 protein_coding Homo_sapiens 1e-26 124
ENST00000372237 TMEM53-001 protein_coding Homo_sapiens 0 745
ENST00000372242 TMEM53-007 protein_coding Homo_sapiens 0 409
ENST00000372243 TMEM53-003 protein_coding Homo_sapiens 6e-27 126
ENST00000420706 TMEM53-009 protein_coding Homo_sapiens 5e-27 124

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