C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 53
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048772 Tmem53 10090 + 4:117251951-117268582 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000062824 Tmem53-001 117251951-117268580 protein_coding
  ENSMUST00000106433 Tmem53-003 117252340-117268580 protein_coding
  ENSMUST00000106434 Tmem53-002 117252042-117268582 protein_coding
  ENSMUST00000125943 Tmem53-005 117252040-117268514 protein_coding
  ENSMUST00000145836 Tmem53-004 117265371-117268582 processed_transcript
  ENSMUST00000154449 Tmem53-006 117252062-117267896 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062824ENSMUST00000106433ENSMUST00000106434ENSMUST00000125943ENSMUST00000145836
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062824 11.835±4.81 17.958±5.60 5.818±0.91 1.893±0.68 6.646±1.59 4.237±0.87 13.621±3.12 21.302±3.81 14.756±10.88 3.364±0.75 1.380±0.29 7.025±2.89 2.192±0.92 290.090±135.59
ENSMUST00000106433 3.736±0.86 42.780±12.99 N/A N/A 18.686±3.36 5.429±2.05 N/A 7.188±1.08 18.440±5.15 3.479±1.16 N/A 12.753±3.53 N/A N/A
ENSMUST00000106434 4.193±1.07 13.543±0.00 N/A N/A 6.913±3.15 1.862±0.29 4.877±0.45 9.472±3.22 6.418±6.88 3.521±1.39 N/A 6.432±3.50 1.012±0.43 80.049±4.22
ENSMUST00000125943 N/A 34.820±5.27 N/A N/A 6.028±1.40 1.633±0.00 4.157±0.91 9.864±2.65 N/A N/A N/A 7.122±1.50 N/A 15.778±0.00
ENSMUST00000145836 N/A N/A N/A 0.236±0.10 N/A N/A N/A N/A 0.214±0.00 N/A 0.092±0.01 1.547±0.00 0.389±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314
CIL_0001PQ CIL_0001PQ_0002 CGP 4:117251951-117497052

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038789 tmem53 transmembrane protein 53 protein_coding Danio_rerio
ENSG00000126106 TMEM53 transmembrane protein 53 protein_coding Homo_sapiens

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