C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein L38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106439 Mrpl38-001 ENSMUSG00000020775 10090 - 11:116131817-116138868 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106439
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106439 16.694±1.94 27.474±2.95 9.898±3.06 11.015±2.69 14.074±3.52 12.837±0.91 15.791±4.40 26.202±2.08 20.240±6.15 9.626±0.51 27.108±1.17 15.045±6.02 19.760±13.98 17.789±7.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_0003KG CIL_0003KG_0003 CGP 11:116121846-116138868

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0005761 ISS mitochondrial ribosome
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309352 MRPL38-001 protein_coding Homo_sapiens 0 1260
ENST00000410030 MRPL38-002 processed_transcript Homo_sapiens 0 298
ENST00000461602 MRPL38-004 retained_intron Homo_sapiens 0 313
ENST00000464758 MRPL38-003 retained_intron Homo_sapiens 0 296
ENST00000474548 MRPL38-007 retained_intron Homo_sapiens 0 350
ENST00000477023 MRPL38-012 processed_transcript Homo_sapiens 0 344
ENST00000477371 MRPL38-011 retained_intron Homo_sapiens 0 451
ENST00000477736 MRPL38-009 retained_intron Homo_sapiens 0 712
ENST00000480203 MRPL38-013 processed_transcript Homo_sapiens 0 412
ENST00000483393 MRPL38-014 retained_intron Homo_sapiens 0 377
ENST00000486101 MRPL38-015 retained_intron Homo_sapiens 0 355
ENST00000493104 MRPL38-005 retained_intron Homo_sapiens 0 627
ENST00000493383 MRPL38-006 retained_intron Homo_sapiens 0 601
ENST00000494179 MRPL38-008 retained_intron Homo_sapiens 0 346
ENST00000585475 MRPL38-016 processed_transcript Homo_sapiens 0 553
ENST00000588620 MRPL38-017 processed_transcript Homo_sapiens 0 377
ENST00000590947 RP11-552F3.12-002 nonsense_mediated_decay Homo_sapiens 0 968
ENST00000593156 RP11-552F3.12-001 retained_intron Homo_sapiens 0 1035

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