C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003KG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000077098-ENSDARG00000039667 CGP 7955 12:45959211-45991572
GeneTranscriptPositionBiotype
ENSDARG00000039667 (mrpl38)
mitochondrial ribosomal protein L38 		ENSDART00000057983 (mrpl38-001) 45972621-45991572 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003KG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141569-ENSG00000204316 CGP 9606 17:75880335-75905413
GeneTranscriptPositionBiotype
ENSG00000141569 (TRIM65)
tripartite motif containing 65 		ENST00000269383 (TRIM65-001) 75888960-75897003 protein_coding
ENST00000540128 (TRIM65-005) 75891180-75896911 protein_coding
ENST00000540812 (TRIM65-004) 75892583-75896640 retained_intron
ENST00000543309 (TRIM65-003) 75891023-75896558 protein_coding
ENST00000591668 (TRIM65-007) 75880335-75892303 protein_coding
ENST00000592642 (TRIM65-008) 75880444-75892149 protein_coding
ENSG00000204316 (MRPL38)
mitochondrial ribosomal protein L38 		ENST00000309352 (MRPL38-001) 75898643-75905413 protein_coding
ENST00000410030 (MRPL38-002) 75904244-75905093 processed_transcript
ENST00000461602 (MRPL38-004) 75901744-75904882 retained_intron
ENST00000464758 (MRPL38-003) 75901891-75904901 retained_intron
ENST00000471434 (MRPL38-010) 75900795-75901517 retained_intron
ENST00000474548 (MRPL38-007) 75901660-75902287 retained_intron
ENST00000477023 (MRPL38-012) 75899159-75900924 processed_transcript
ENST00000477371 (MRPL38-011) 75899158-75901424 retained_intron
ENST00000477736 (MRPL38-009) 75900812-75904838 retained_intron
ENST00000480203 (MRPL38-013) 75898928-75900863 processed_transcript
ENST00000483393 (MRPL38-014) 75898952-75899868 retained_intron
ENST00000486101 (MRPL38-015) 75898644-75899581 retained_intron
ENST00000493104 (MRPL38-005) 75901183-75904871 retained_intron
ENST00000493383 (MRPL38-006) 75901555-75904858 retained_intron
ENST00000494179 (MRPL38-008) 75901237-75904859 retained_intron
ENST00000585475 (MRPL38-016) 75901242-75904878 processed_transcript
ENST00000588620 (MRPL38-017) 75898951-75900473 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0003KG_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000054517-ENSMUSG00000020775 CGP 10090 11:116121846-116138868
GeneTranscriptPositionBiotype
ENSMUSG00000020773 (Trim47)
tripartite motif-containing 47 		ENSMUST00000021120 (Trim47-002) 116105752-116110246 protein_coding
ENSMUST00000106441 (Trim47-001) 116105752-116110237 protein_coding
ENSMUST00000127235 (Trim47-005) 116106339-116107740 processed_transcript
ENSMUST00000133039 (Trim47-007) 116107811-116127210 processed_transcript
ENSMUST00000134691 (Trim47-004) 116106392-116108035 processed_transcript
ENSMUST00000141531 (Trim47-003) 116105752-116108119 processed_transcript
ENSMUST00000149957 (Trim47-006) 116106209-116107083 processed_transcript
ENSMUSG00000020775 (Mrpl38)
mitochondrial ribosomal protein L38 		ENSMUST00000106439 (Mrpl38-001) 116131817-116138868 protein_coding
ENSMUST00000124722 (Mrpl38-006) 116134256-116134627 retained_intron
ENSMUST00000133159 (Mrpl38-004) 116132785-116138789 retained_intron
ENSMUST00000138457 (Mrpl38-003) 116137782-116138865 retained_intron
ENSMUST00000142550 (Mrpl38-002) 116131821-116138775 retained_intron
ENSMUST00000145655 (Mrpl38-005) 116134062-116134456 retained_intron
ENSMUSG00000054517 (Trim65)
tripartite motif-containing 65 		ENSMUST00000067632 (Trim65-001) 116124708-116131126 protein_coding
ENSMUST00000106440 (Trim65-003) 116121846-116131124 protein_coding
ENSMUST00000154061 (Trim65-002) 116124708-116131128 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003KG_0001ENSDARG00000039667ENSDART00000057983CIL_0003KG_0002ENSG00000141569ENST00000269383ENST00000540128ENST00000540812ENST00000543309ENST00000591668ENST00000592642ENSG00000204316ENST00000309352ENST00000410030ENST00000461602ENST00000464758ENST00000471434ENST00000474548ENST00000477023ENST00000477371ENST00000477736ENST00000480203ENST00000483393ENST00000486101ENST00000493104ENST00000493383ENST00000494179ENST00000585475ENST00000588620CIL_0003KG_0003ENSMUSG00000020773ENSMUST00000021120ENSMUST00000106441ENSMUST00000127235ENSMUST00000133039ENSMUST00000134691ENSMUST00000141531ENSMUST00000149957ENSMUSG00000020775ENSMUST00000106439ENSMUST00000124722ENSMUST00000133159ENSMUST00000138457ENSMUST00000142550ENSMUST00000145655ENSMUSG00000054517ENSMUST00000067632ENSMUST00000106440ENSMUST00000154061
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003KG_0001ENSDARG00000039667ENSDART00000057983CIL_0003KG_0002ENSG00000141569ENST00000269383ENST00000540128ENST00000543309ENSG00000204316ENST00000309352ENST00000410030ENST00000486101ENST00000493383ENST00000585475CIL_0003KG_0003ENSMUSG00000020773ENSMUST00000021120ENSMUST00000106441ENSMUST00000127235ENSMUST00000133039ENSMUST00000134691ENSMUST00000141531ENSMUSG00000020775ENSMUST00000106439ENSMUST00000133159ENSMUST00000138457ENSMUST00000142550ENSMUSG00000054517ENSMUST00000067632ENSMUST00000106440ENSMUST00000154061
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000039667 ENSDART00000057983 N/A N/A N/A 10.804±7.53 N/A N/A 37.681±4.20 22.112±0.00 6.550±0.00 N/A 18.233±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141569 ENST00000269383 4.186±0.00 4.093±0.00 0.248±0.00 0.931±0.00 2.725±0.00 1.510±1.39 1.051±0.00 2.556±0.00 1.712±0.00 1.413±0.86 1.380±1.22 4.251±3.09 2.265±0.48 N/A
ENST00000540128 N/A N/A N/A 1.546±0.00 1.651±0.00 0.789±0.00 N/A N/A N/A N/A N/A 1.336±0.00 N/A N/A
ENST00000540812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543309 N/A N/A N/A N/A 1.995±0.00 N/A N/A N/A N/A N/A 1.304±0.00 N/A N/A N/A
ENST00000591668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000204316 ENST00000309352 12.079±0.00 29.843±0.00 N/A 16.846±0.00 8.550±6.91 8.353±7.30 12.894±11.84 27.789±0.00 32.850±0.00 10.302±8.89 29.097±23.44 25.798±17.34 22.145±7.55 26.192±3.10
ENST00000410030 N/A N/A 1.035±0.00 N/A N/A 4.530±0.00 N/A N/A N/A N/A 4.715±0.00 N/A 28.462±0.00 N/A
ENST00000461602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 61.578±0.00 34.219±0.00 N/A
ENST00000493104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493383 N/A N/A N/A N/A N/A N/A N/A 2.615±0.00 3.090±0.00 N/A N/A N/A N/A N/A
ENST00000494179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585475 17.786±0.00 N/A N/A N/A 16.759±0.00 21.252±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020773 ENSMUST00000021120 9.343±1.29 8.095±4.01 7.122±0.16 0.563±0.08 9.140±1.84 8.035±2.19 3.626±0.21 5.631±2.04 1.349±0.58 8.990±1.28 1.813±0.68 15.169±2.20 2.077±0.14 1.567±0.61
ENSMUST00000106441 8.972±2.86 10.542±3.25 12.441±1.65 1.541±0.71 12.526±2.16 8.240±1.68 4.725±1.41 6.352±0.87 1.803±0.96 10.497±1.08 2.257±0.93 8.592±2.52 3.129±1.21 1.062±0.34
ENSMUST00000127235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.191±0.00 N/A
ENSMUST00000133039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.595±0.00
ENSMUST00000134691 N/A N/A N/A 1.366±0.00 N/A N/A N/A N/A N/A N/A N/A 6.538±0.00 2.902±0.00 1.501±0.00
ENSMUST00000141531 N/A N/A N/A N/A N/A N/A 2.414±0.00 4.194±0.89 N/A N/A 1.778±0.40 7.736±2.85 1.346±0.00 0.787±0.08
ENSMUST00000149957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020775 ENSMUST00000106439 16.694±1.94 27.474±2.95 9.898±3.06 11.015±2.69 14.074±3.52 12.837±0.91 15.791±4.40 26.202±2.08 20.240±6.15 9.626±0.51 27.108±1.17 15.045±6.02 19.760±13.98 17.789±7.39
ENSMUST00000124722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133159 8.705±1.79 25.321±7.19 4.195±0.02 13.537±8.96 6.949±1.39 8.550±1.93 N/A 5.996±0.00 4.590±0.00 6.653±0.84 N/A 9.210±6.19 12.317±8.15 11.077±0.00
ENSMUST00000138457 N/A 19.146±2.82 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.900±0.00 N/A
ENSMUST00000142550 N/A N/A N/A 1.175±0.00 N/A N/A N/A N/A N/A N/A N/A 12.968±9.82 N/A 4.240±0.00
ENSMUST00000145655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054517 ENSMUST00000067632 3.726±0.41 4.544±0.61 2.725±0.00 0.576±0.04 6.173±1.32 4.174±0.35 1.800±0.14 2.028±0.05 1.299±0.64 7.110±0.42 0.624±0.08 4.211±1.15 0.648±0.27 0.093±0.00
ENSMUST00000106440 3.302±0.53 3.873±0.52 3.512±0.88 0.659±0.44 5.207±1.27 3.703±0.25 1.626±0.51 2.578±0.48 1.308±0.55 5.082±0.00 0.961±0.27 3.554±1.38 0.637±0.06 0.209±0.00
ENSMUST00000154061 N/A N/A N/A N/A N/A N/A N/A N/A 0.791±0.06 N/A N/A 0.739±0.00 N/A N/A

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