C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mesoderm posterior 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107394 Mesp2-201 ENSMUSG00000030543 10090 + 7:79810727-79813431 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107394
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107394 0.176±0.10 0.346±0.10 0.036±0.02 0.364±0.22 0.322±0.11 0.399±0.16 0.052±0.03 0.228±0.05 0.055±0.04 3.245±0.32 0.035±0.00 1.887±0.88 0.026±0.01 2.440±0.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RA CIL_0002RA_0004 CGP 7:79792241-79813431
CIL_0002RF CIL_0002RF_0003 CGP 7:79810727-79848210

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001756 IGI somitogenesis
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0007219 IGI Notch signaling pathway
GO:0008078 IGI mesodermal cell migration
GO:0023019 IDA signal transduction involved in regulation of gene expression
GO:0032525 IMP somite rostral/caudal axis specification
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300057 MESP1-001 protein_coding Homo_sapiens 0 255
ENST00000341735 MESP2-001 protein_coding Homo_sapiens 0 394

Loading