C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mesoderm posterior basic helix-loop-helix transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341735 MESP2-001 ENSG00000188095 9606 + 15:89776358-89778692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLungOvaryPlacentaTestisENST00000341735
Transcript ID Adipose Adrenal Brain Breast Colon Lung Ovary Placenta Testis
ENST00000341735 0.324±0.00 0.206±0.00 0.441±0.00 0.592±0.00 0.408±0.00 0.046±0.00 0.129±0.04 0.133±0.00 0.413±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RA CIL_0002RA_0003 CGP 15:89748661-89778754
CIL_0002RF CIL_0002RF_0002 CGP 15:89760591-89815401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001756 IEA somitogenesis
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007219 IEA Notch signaling pathway
GO:0008078 IEA mesodermal cell migration
GO:0023019 IEA signal transduction involved in regulation of gene expression
GO:0032525 IEA somite rostral/caudal axis specification
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107394 Mesp2-201 protein_coding Mus_musculus 0 394
ENSMUST00000032760 Mesp1-001 protein_coding Mus_musculus 0 259

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